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CSPI04G08790 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G08790
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr4:6539911..6540339
RNA-Seq ExpressionCSPI04G08790
SyntenyCSPI04G08790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026133.1 hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa]3.4e-3665.89Show/hide
Query:  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISS
        SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+MT I GAKSEADLQ VM+TV++   DD K++  ED    S
Subjt:  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISS

Query:  NSFANDIDFDNDPYYNFDISDPYFDSMLE
        NS  NDIDF+N+PYYNFDI DPY +S  E
Subjt:  NSFANDIDFDNDPYYNFDISDPYFDSMLE

KAA0050626.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.3e-4572.34Show/hide
Query:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIY
        YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD      +NEE+IAKWFKTN  LS+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   
Subjt:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIY

Query:  DDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS
        DD+K++D ED    S+S  NDIDF NDPYYNFDISD Y DS
Subjt:  DDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.6e-4670.42Show/hide
Query:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTI
        MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I
Subjt:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTI

Query:  YDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS
        +DD+K++D EDTRISS+S  N+ID DND YYNFDI DPY DS
Subjt:  YDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS

KGN53659.1 hypothetical protein Csa_014527 [Cucumis sativus]1.5e-7197.18Show/hide
Query:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDD
        MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDD
Subjt:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDD

Query:  DKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE
        DK+NDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS+LE
Subjt:  DKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE

TYK23161.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.5e-2676.14Show/hide
Query:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADL
        YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD      +N+E+IAKW KTN HLS+EEEDQFLL KNSIMT IAGAKSE DL
Subjt:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADL

TrEMBL top hitse value%identityAlignment
A0A0A0KXT5 Uncharacterized protein7.1e-7297.18Show/hide
Query:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDD
        MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDD
Subjt:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDD

Query:  DKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE
        DK+NDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS+LE
Subjt:  DKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE

A0A5A7U8X4 Retrotransposable element Tf22.5e-4572.34Show/hide
Query:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIY
        YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD      +NEE+IAKWFKTN  LS+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   
Subjt:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIY

Query:  DDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS
        DD+K++D ED    S+S  NDIDF NDPYYNFDISD Y DS
Subjt:  DDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS

A0A5A7UEA0 Retrotransposable element Tf21.8e-4670.42Show/hide
Query:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTI
        MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I
Subjt:  MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTI

Query:  YDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS
        +DD+K++D EDTRISS+S  N+ID DND YYNFDI DPY DS
Subjt:  YDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS

A0A5D3CI63 Uncharacterized protein1.7e-3665.89Show/hide
Query:  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISS
        SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+MT I GAKSEADLQ VM+TV++   DD K++  ED    S
Subjt:  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISS

Query:  NSFANDIDFDNDPYYNFDISDPYFDSMLE
        NS  NDIDF+N+PYYNFDI DPY +S  E
Subjt:  NSFANDIDFDNDPYYNFDISDPYFDSMLE

A0A5D3DHL2 Retrotransposable element Tf21.2e-2676.14Show/hide
Query:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADL
        YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD      +N+E+IAKW KTN HLS+EEEDQFLL KNSIMT IAGAKSE DL
Subjt:  YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTG
GTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCA
TGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGA
ATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTG
GTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCA
TGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGA
ATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA
Protein sequenceShow/hide protein sequence
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTR
ISSNSFANDIDFDNDPYYNFDISDPYFDSMLE