CuGenDBv2

Gene ID	CSPI04G08890
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Genome location	Chr4:6661116..6662117
RNA-Seq Expression	CSPI04G08890
Synteny	CSPI04G08890
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR014848 - Reduced growth phenotype protein 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008455604.1 PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo]

1.4e-43

95.88

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

XP_008455605.1 PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo]

1.4e-43

95.88

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

XP_008455607.1 PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo]

1.4e-43

95.88

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

XP_011653362.1 uncharacterized protein LOC101218523 [Cucumis sativus]

4.5e-47

100

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

XP_038904898.1 uncharacterized protein LOC120091119 isoform X1 [Benincasa hispida]

1.4e-40

91.75

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTG A+ADKVE SAKSE FPGLKLRSDKDVYRPGDPVVVTIEICSSV Q DCSLLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVN2 Uncharacterized protein

2.2e-47

100

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

A0A1S3C1F5 uncharacterized protein LOC103495739 isoform X2

6.6e-44

95.88

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Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

A0A1S3C208 uncharacterized protein LOC103495739 isoform X4

6.6e-44

95.88

Show/hide

Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

A0A1S4E0M0 uncharacterized protein LOC103495739 isoform X1

6.6e-44

95.88

Show/hide

Query:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

A0A6J1HKY7 uncharacterized protein LOC111464493

8.9e-41

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Query:  MFGSRFSIFGTG-AAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSK
        MFGSRFSIFG+G AAAADKVEKSAKS+ FPGLKLRSDKDVY PGDPVVVTIEI SSVPQ DCSL IERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG +
Subjt:  MFGSRFSIFGTG-AAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

5.9e-21

51.43

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Query:  MFGSRFSIFGTGAAAA--DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQL-DCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
        M  SRFS  G G+++   D V  S  S+  P L +++DKDVYRPGD + VTIE+ +S     + S+L+E+L FE+ GL KLD QWFSTQKP PGSK RRG
Subjt:  MFGSRFSIFGTGAAAA--DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQL-DCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG

Query:  SKSIL
            L
Subjt:  SKSIL

Sequences

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CDS sequence

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ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAA
AGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTG
GGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGC
CTTCTCCTTGTGTAA

mRNA sequence

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AAAAAAAAAAAAAAAAGGAACAAAGAAGTCATTATCTCGTCCTCGACCTCCTCTTGCGCGTCTCTAATCCGGTGACGCTCTGACGACATCACGACCCTTACGGCGACCCA
ACTTCTTCAACAACTTCTTCCAACGCAAGCGGTGACACACCCAGGTGACCGAAGCTGAAGCGTTCGATTTGAGAGAGGGCGTGGGTTCCTTGCGTTCTCCGGCGACTGTG
GTGTAGACCCACGGCGACTCGAGGGTTCCAACGTCTATTCTGTAACGTGGGACGTCAGCCTTTGAACCCACGAACAGCGCGTGAATTTCCCTGAAACTCTCAAAAAAGAC
GTATAGGAAGTGGAAAAGTGGCATCTCAAGCAGAGGCCAATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCAAA
GAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACT
GCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGT
TCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGCCTTCTCCTTGTGTAATGTGTGATTGTTATTCGTCAAATTTGTTATTAGCTTTTATTCTGTTACGTTTTGTA
ATGTTTCCAGTAAACTCTCTATTTGACAGAGGGACTTTTCATTCTAAGGCAGTATTCCTTTTTGGAGCAATGAAAGGAAACCAGTACTTGTCACTTTGTAGAATTTGCAT
GGTTCTGCAAAATTTTTACTTATTCATCTACTGTCTTTTCAAAAATTGCATCGGTTTTCCTAGCTGATGTAGTTCAATTTCATGTCCTTTGTTTTGTCAGGTGAACACAT
TTTCATGGACTG

Protein sequence

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MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSKSILYDIFLNRC
LLLV

CSPI04G08890 (gene) of Cucumber (PI 183967) v1 genome