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CSPI04G08940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G08940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationChr4:6748899..6749078
RNA-Seq ExpressionCSPI04G08940
SyntenyCSPI04G08940
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033013.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.2e-0456.82Show/hide
Query:  NQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLIT
        +QPY QDK E   SGV+ S  PK  GKV +MT++EA++NPH+IT
Subjt:  NQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLIT

KAA0036513.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.2e-0858.62Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEA-RNNPHLIT
        G    P+  +Q VNQPY  DK E  PSGV+R  R KLQG VCAMT++EA R+NPH+IT
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEA-RNNPHLIT

KAA0066541.1 uncharacterized protein E6C27_scaffold25G001020 [Cucumis melo var. makuwa]7.7e-0653.57Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI
        GVQ      SQ VNQ Y     E   SGV R  RPK QG VC MTQ+EAR NPH++
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI

KAA0068145.1 hypothetical protein E6C27_scaffold238G001100 [Cucumis melo var. makuwa]8.8e-1061.02Show/hide
Query:  MGVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLITG
        +GVQGN RT  Q VNQPY  D+ E  PSGVR   RPK QGKVC MTQ++A+N+ H+I G
Subjt:  MGVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLITG

TYK00237.1 uncharacterized protein E5676_scaffold895G00100 [Cucumis melo var. makuwa]7.7e-0653.57Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI
        GVQ      SQ VNQ Y     E   SGV R  RPK QG VC MTQ+EAR NPH++
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI

TrEMBL top hitse value%identityAlignment
A0A5A7SRF4 DNA/RNA polymerases superfamily protein3.5e-0456.82Show/hide
Query:  NQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLIT
        +QPY QDK E   SGV+ S  PK  GKV +MT++EA++NPH+IT
Subjt:  NQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLIT

A0A5A7T0V0 DNA/RNA polymerases superfamily protein4.0e-0858.62Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEA-RNNPHLIT
        G    P+  +Q VNQPY  DK E  PSGV+R  R KLQG VCAMT++EA R+NPH+IT
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEA-RNNPHLIT

A0A5A7VLP5 Uncharacterized protein3.7e-0653.57Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI
        GVQ      SQ VNQ Y     E   SGV R  RPK QG VC MTQ+EAR NPH++
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI

A0A5A7VQZ2 CCHC-type domain-containing protein4.2e-1061.02Show/hide
Query:  MGVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLITG
        +GVQGN RT  Q VNQPY  D+ E  PSGVR   RPK QGKVC MTQ++A+N+ H+I G
Subjt:  MGVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLITG

A0A5D3BM41 Uncharacterized protein3.7e-0653.57Show/hide
Query:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI
        GVQ      SQ VNQ Y     E   SGV R  RPK QG VC MTQ+EAR NPH++
Subjt:  GVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTCCAAGGTAACCCAAGGACCGCGTCGCAATTAGTTAACCAACCTTACAACCAAGACAAAATTGAAGCTAGGCCTAGCGGAGTTAGAAGATCTGGAAGGCCCAA
GTTACAAGGGAAGGTTTGTGCTATGACCCAGAATGAGGCTAGAAATAACCCTCACTTGATCACAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTCCAAGGTAACCCAAGGACCGCGTCGCAATTAGTTAACCAACCTTACAACCAAGACAAAATTGAAGCTAGGCCTAGCGGAGTTAGAAGATCTGGAAGGCCCAA
GTTACAAGGGAAGGTTTGTGCTATGACCCAGAATGAGGCTAGAAATAACCCTCACTTGATCACAGGTTAA
Protein sequenceShow/hide protein sequence
MGVQGNPRTASQLVNQPYNQDKIEARPSGVRRSGRPKLQGKVCAMTQNEARNNPHLITG