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CSPI04G09410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G09410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionClassical arabinogalactan protein 1-like
Genome locationChr4:7358560..7359430
RNA-Seq ExpressionCSPI04G09410
SyntenyCSPI04G09410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061155.1 classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]7.6e-2978.86Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNG
        MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS+ SPKSSPA+APTPSSL SPPSPPS+SPST    SPSPA+SP+SISSPPADAPAPSGNG
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASITFSV GS AVALYAVVLMI
Subjt:  AASITFSVFGSVAVALYAVVLMI

KGN53727.1 hypothetical protein Csa_015026 [Cucumis sativus]1.3e-4197.48Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI
        MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPS +SPKSSPAVAPTPSSL SPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI

Query:  TFSVFGSVAVALYAVVLMI
        TFSVFGSVAVALYAVVLMI
Subjt:  TFSVFGSVAVALYAVVLMI

XP_004137273.2 60S ribosomal protein L22 [Cucumis sativus]1.2e-2996.81Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSG
        MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPS +SPKSSPAVAPTPSSL SPPSPPSSSPSTSPSPASSPASISSPPADAPAPSG
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSG

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]3.2e-2771.54Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG
        MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS+     SPKSSPA APTP+SL SPPSPP++SPS SPSP+ SP+SISSPPADAPAPSGN 
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASI+ S+FGSVA  LYA+VLMI
Subjt:  AASITFSVFGSVAVALYAVVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]1.6e-2672.8Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAA--SPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPAS----ISSPPADAPAPSG
        MAI S VA+I V+  I SA AQSP A  SPS SP+K+PS +PS+ SPKSSPA APTPSSL SPPSPPS+SP+TSPSP +SPA+    ISSPPADAPAPSG
Subjt:  MAITSLVALIFVSFFIASAFAQSPAA--SPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPAS----ISSPPADAPAPSG

Query:  NGAASITFSVFGSVAVALYAVVLMI
        NGAASI+FSVFGSVAV LY VVL+I
Subjt:  NGAASITFSVFGSVAVALYAVVLMI

TrEMBL top hitse value%identityAlignment
A0A0A0KZB8 Uncharacterized protein6.4e-4297.48Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI
        MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPS +SPKSSPAVAPTPSSL SPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASI

Query:  TFSVFGSVAVALYAVVLMI
        TFSVFGSVAVALYAVVLMI
Subjt:  TFSVFGSVAVALYAVVLMI

A0A5A7V5Q9 Classical arabinogalactan protein 1-like3.7e-2978.86Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNG
        MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS+ SPKSSPA+APTPSSL SPPSPPS+SPST    SPSPA+SP+SISSPPADAPAPSGNG
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASITFSV GS AVALYAVVLMI
Subjt:  AASITFSVFGSVAVALYAVVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like1.0e-2672.36Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG
        MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS+     SPKSSPA APTP+SL SPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN 
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASI+FS+FGSVA  LYA+VLMI
Subjt:  AASITFSVFGSVAVALYAVVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like3.5e-2473.17Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKA----PSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG
        MAI S V +I V+  I SA AQSPAASPSLSP KSPSKA    PS+ SPKSSPA APT          P+SSPSTSPSPA+SP+SISSPPADAPAPSGNG
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKA----PSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASI+FSVFGSVAV LYAVVLMI
Subjt:  AASITFSVFGSVAVALYAVVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like2.7e-2469.11Show/hide
Query:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG
        MA    V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS+     SPKSSPA APTP+SL SPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN 
Subjt:  MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSL----HSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNG

Query:  AASITFSVFGSVAVALYAVVLMI
        AASI+ S+FGSVA  L+A+V MI
Subjt:  AASITFSVFGSVAVALYAVVLMI

SwissProt top hitse value%identityAlignment
Q8LCN5 Classical arabinogalactan protein 19.0e-0948.82Show/hide
Query:  SLVALIFVSFFIASAFAQSPAASPS------LSPTKSPSK------APSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAP
        SLV ++  +  I+SA AQSPA +PS      +SP  SP K      AP + SP  SPA A TP S  SPPSPP +   T+ SPA SP++IS  P +AP P
Subjt:  SLVALIFVSFFIASAFAQSPAASPS------LSPTKSPSK------APSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        +  GA S  F+ FGSVAV L A VL+I
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI

Arabidopsis top hitse value%identityAlignment
AT5G64310.1 arabinogalactan protein 16.4e-1048.82Show/hide
Query:  SLVALIFVSFFIASAFAQSPAASPS------LSPTKSPSK------APSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAP
        SLV ++  +  I+SA AQSPA +PS      +SP  SP K      AP + SP  SPA A TP S  SPPSPP +   T+ SPA SP++IS  P +AP P
Subjt:  SLVALIFVSFFIASAFAQSPAASPS------LSPTKSPSK------APSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAP

Query:  SGNGAASITFSVFGSVAVALYAVVLMI
        +  GA S  F+ FGSVAV L A VL+I
Subjt:  SGNGAASITFSVFGSVAVALYAVVLMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTACAAGCCTTGTTGCCCTTATTTTTGTGTCATTCTTTATCGCCTCTGCTTTTGCTCAATCCCCGGCTGCATCTCCCTCATTGTCTCCCACCAAATCACCCTC
CAAGGCTCCATCCCTTCACTCCCCCAAATCCTCTCCCGCGGTGGCTCCTACTCCTTCCTCCTTGAACTCTCCACCATCTCCTCCTTCTTCTTCTCCCTCTACTTCTCCGT
CTCCGGCCAGTTCTCCCGCCTCCATCTCCTCACCGCCTGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTCGGATCTGTTGCCGTT
GCGCTATACGCCGTCGTTTTGATGATCTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAAACGGAACCCCTCTCTTTAGGCCTTCCCATTCACTACACTCATTATTACGCCTCTCTTAAATTTCGAATACGCATCCCCCCCGTTCATCACCCACATTTCTTTCA
TCACCTTTTCTACTCCCATCCAACGGCTCCCATCATATTTACCTTTCACTCCAACGCTTCTTTCACTCTCTTCTTTCTTCTATATATACTCCCTCTCTGCTACTGCTTTC
TTCTCAATCACTCACAACTCTCTCTCCATTTTCTCTTCTCTTTTTACATTCATCTTTTCCTTTCTTTCAATCTTTCCATTTCATTTCCTATACACAAATGGCGATTACAA
GCCTTGTTGCCCTTATTTTTGTGTCATTCTTTATCGCCTCTGCTTTTGCTCAATCCCCGGCTGCATCTCCCTCATTGTCTCCCACCAAATCACCCTCCAAGGCTCCATCC
CTTCACTCCCCCAAATCCTCTCCCGCGGTGGCTCCTACTCCTTCCTCCTTGAACTCTCCACCATCTCCTCCTTCTTCTTCTCCCTCTACTTCTCCGTCTCCGGCCAGTTC
TCCCGCCTCCATCTCCTCACCGCCTGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTCGGATCTGTTGCCGTTGCGCTATACGCCG
TCGTTTTGATGATCTGAGTGCCACTCGGATTCCATTCCTTCTCTTTGTCTGTCTATTTGAGTGATTTATTGTAGCATTTCACTGAGTACATTTTATGTTGATTTTGTATT
TTTGGTTTTTTTTTACTTTCACAGTTATTATTATATATTATTCTTCATTTATCTAATTTAATTCGTTTTATTGCCTTCCAGTTATGTGTTTTTGTTCTTCT
Protein sequenceShow/hide protein sequence
MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSLHSPKSSPAVAPTPSSLNSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAV
ALYAVVLMI