CuGenDBv2

Gene ID	CSPI04G09490
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA replication complex GINS protein PSF2
Genome location	Chr4:7479436..7482502
RNA-Seq Expression	CSPI04G09490
Synteny	CSPI04G09490
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0044238 - primary metabolic process (biological process) GO:0031981 - nuclear lumen (cellular component)
InterPro domains	IPR007257 - DNA replication complex GINS protein Psf2 IPR036224 - GINS, helical bundle-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137154.1 DNA replication complex GINS protein PSF2 [Cucumis sativus]

8.2e-46

74.17

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC   +P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

XP_008462891.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo]

1.5e-42

71.52

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC   +P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDR+TNMQTQG +HGQ RRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

XP_008462892.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X2 [Cucumis melo]

1.9e-42

95.05

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDR+TNMQTQG +HGQ RRPLRR
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

XP_038905117.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida]

4.2e-42

71.52

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC    P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTN+Q QG DHGQ RRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

XP_038905120.1 DNA replication complex GINS protein PSF2 isoform X2 [Benincasa hispida]

4.2e-42

71.52

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC    P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTN+Q QG DHGQ RRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0R7 Sld5 domain-containing protein

4.0e-46

99.01

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

A0A1S3CIF8 DNA replication complex GINS protein PSF2

9.2e-43

95.05

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDR+TNMQTQG +HGQ RRPLRR
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

A0A1S4E3Y0 DNA replication complex GINS protein PSF2

7.0e-43

71.52

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC   +P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDR+TNMQTQG +HGQ RRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

A0A5D3C8I7 DNA replication complex GINS protein PSF2 isoform X1

3.9e-41

70.83

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC   +P   S+EK            GS   +   Y+ IS      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQR
        EVNIVRPFVVRALQAIYKHGNPELVPDQDR+TNMQTQG +HGQR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQR

A0A6J1HPD8 DNA replication complex GINS protein PSF2

3.0e-41

69.54

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Query:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
        GKC    P   S+EK            GS   +   Y+ +S      ++ D ARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM
Subjt:  GKCQSSSPN-SSLEKKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAM

Query:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR
        EVNIVRPFV RALQAIYKHGNPELVPDQ+RMTN+Q+QG DHGQ RRPLRRR
Subjt:  EVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRRR

SwissProt top hits

e value

%identity

Alignment

Q9C7A8 DNA replication complex GINS protein PSF2

6.4e-25

62.38

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH  PE   D+D  ++ Q Q + + + RRPLR+
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

Arabidopsis top hits

e value

%identity

Alignment

AT3G12530.1 PSF2

4.5e-26

62.38

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH  PE   D+D  ++ Q Q + + + RRPLR+
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

AT3G12530.2 PSF2

4.5e-26

62.38

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Query:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR
        D ARDD+PDMY+VRSL+EDIRDVR HK+ET+L S    TSAVKI ++SAMEVNIVRPFV+RAL+A YKH  PE   D+D  ++ Q Q + + + RRPLR+
Subjt:  DSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPELVPDQDRMTNMQTQGQDHGQRRRPLRR

Query:  R
        R
Subjt:  R

Sequences

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CDS sequence

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ATGAGAAGGCATGCGGTTTATGAGATGAGCTACAGTAAGAATGGCATCACCTCAAAGATAGGAAGGAAGAGAAGTGGACAACATAAGGGAACGAGCAACTTTCAAAAGAA
GTCTCGGAATGTGGAGGTAGCTTCAGATTTGTCGGAGATCAGGAAAACCCAAGTAAGACGAGTATGGTCATCAATAAAGGTCACAAACCATCATTTTCCAGAGGAGGTAG
TGACCTTGGATGGTCCCCAAACATCACTATGGACAAGAGTAAAAGGTCAAGTTGGCTTATCGGGTTGCGAAGGAAAATGCCAATCATCTTCCCCAAACTCAAGTCTTGAA
AAGAAACAGAATCAGCGAAATCTGTCCTTTCCCGGCAATGGGAGCGAAGGAGCCATCAACAATTTTTATCTTCTCATTTCCAGCACACGGAATCTTAATGTTGTGGATGA
TAGTGCACGAGATGACGTTCCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGAGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATCGATACAC
GCACATCTGCAGTGAAGATTAAAGATCTATCTGCTATGGAAGTGAATATAGTTCGACCTTTCGTCGTTAGAGCACTGCAAGCAATTTACAAGCATGGAAATCCAGAATTG
GTCCCAGATCAAGATAGGATGACCAATATGCAGACACAAGGACAAGATCATGGACAAAGACGGCGGCCTCTTCGAAGACGGTAG

mRNA sequence

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Protein sequence

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MRRHAVYEMSYSKNGITSKIGRKRSGQHKGTSNFQKKSRNVEVASDLSEIRKTQVRRVWSSIKVTNHHFPEEVVTLDGPQTSLWTRVKGQVGLSGCEGKCQSSSPNSSLE
KKQNQRNLSFPGNGSEGAINNFYLLISSTRNLNVVDDSARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVVRALQAIYKHGNPEL
VPDQDRMTNMQTQGQDHGQRRRPLRRR

CSPI04G09490 (gene) of Cucumber (PI 183967) v1 genome