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CSPI04G09780 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G09780
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:7769863..7771324
RNA-Seq ExpressionCSPI04G09780
SyntenyCSPI04G09780
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036024.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.5e-3550.9Show/hide
Query:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------
        ++R   + + + +ELKFKV +EVYLKLRPYRQRSL RKRCEKL P++YGPY I EETGE                                         
Subjt:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------

Query:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
                  VLG+RWNK+LGANE LVKWK LPE +ATWE+V+Q+NQQFPTFHLEDKVNLE RGIV+
Subjt:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

KAA0064097.1 uncharacterized protein E6C27_scaffold44083G00010 [Cucumis melo var. makuwa]1.1e-3868.8Show/hide
Query:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAV
        +ELKFKVGDEVYLKLRPYRQRSL RKRCEKLAP++YGPY I EE GE                     VL +RWNK+LGANE LVKWK LPE EATWE+V
Subjt:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAV

Query:  YQMNQQFPTFHLEDKVNLELRGIVK
        +Q+NQQFPTFHLEDKVNLE RGIV+
Subjt:  YQMNQQFPTFHLEDKVNLELRGIVK

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]1.5e-4061.29Show/hide
Query:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------------------------------------VL
        +ELKFKVGDEVYLKLRPY QRSLARKRCEKLAPKFYGPYTIIEE GE                                                   VL
Subjt:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------------------------------------VL

Query:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
        G+RWNKDLGANE LVKWKNLPETEATWE VYQMNQQFPTFHLEDKVNLE RG+V+
Subjt:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]3.9e-3650.9Show/hide
Query:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------
        ++R   + +   +ELKFK+GDEVYLKLRPYRQRSLARK+CEKL+PKFYGPY +IEE GE                                         
Subjt:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------

Query:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
                  VLG+RWNK+LG NE L+KWKNLP++EATWE+VY +NQQFP FHLEDKVNLE RGIV+
Subjt:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]1.4e-3855.88Show/hide
Query:  NRVRDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE--------------------------------------
        N  ++R   + +++ +ELKFKVGDEVYLKLRPYRQ SLARKR EKLAPKFYGPY IIEE GE                                      
Subjt:  NRVRDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE--------------------------------------

Query:  -------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
                     VLG+RWNKDLGANE LVKWK LPE EATWEAVYQMNQQFPTFHLEDKVNLE RGIV+
Subjt:  -------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

TrEMBL top hitse value%identityAlignment
A0A5A7SXG0 Transposon Ty3-G Gag-Pol polyprotein4.6e-3550.9Show/hide
Query:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------
        ++R   + + + +ELKFKV +EVYLKLRPYRQRSL RKRCEKL P++YGPY I EETGE                                         
Subjt:  RDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-----------------------------------------

Query:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
                  VLG+RWNK+LGANE LVKWK LPE +ATWE+V+Q+NQQFPTFHLEDKVNLE RGIV+
Subjt:  ----------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

A0A5A7U9P7 Retrotransposable element Tf23.0e-3452.9Show/hide
Query:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETG---------------------------------------------------EVL
        +ELK KVG+EVYLKLRPYRQRSLARK+ EKLAP++YGPY IIEE G                                                    VL
Subjt:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETG---------------------------------------------------EVL

Query:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
        G+RWNK+LGANE L+KW++LPE+EATWE+VYQMNQQFP+FHLEDKVN+E RGIV+
Subjt:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

A0A5A7VAR2 Chromo domain-containing protein5.3e-3968.8Show/hide
Query:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAV
        +ELKFKVGDEVYLKLRPYRQRSL RKRCEKLAP++YGPY I EE GE                     VL +RWNK+LGANE LVKWK LPE EATWE+V
Subjt:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAV

Query:  YQMNQQFPTFHLEDKVNLELRGIVK
        +Q+NQQFPTFHLEDKVNLE RGIV+
Subjt:  YQMNQQFPTFHLEDKVNLELRGIVK

A0A5D3BJD8 Disease resistance protein1.7e-3450.88Show/hide
Query:  RNRVRDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-------------------------------------
        +NR++ R     E + +ELKFKV +EVYLKLRPYRQRSL RKRCEKL P++YGPY I EE GE                                     
Subjt:  RNRVRDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE-------------------------------------

Query:  --------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
                      VLG+RWNK+LGANE LVKWK LPE +ATWE+V+Q+NQQFPTFHLEDKVNLE RGIV+
Subjt:  --------------VLGVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein8.7e-3453.55Show/hide
Query:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------------------------------------VL
        +ELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPY I+EE GE                                                   VL
Subjt:  QELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGE---------------------------------------------------VL

Query:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK
        G+RWN D+GANE L+KWK L ++EATWE V  MNQQ+P+FHLEDKVN E  GIVK
Subjt:  GVRWNKDLGANE-LVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLELRGIVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGAAATCGAGTACGAGACAGAAGATATGGTATTCCTGAAAATCAAGTACAAGAGTTGAAGTTCAAGGTAGGAGATGAAGTATACCTGAAGCTCAGACCTTATAG
GCAGAGGTCCTTAGCTCGAAAAAGATGTGAAAAGCTAGCACCAAAATTCTATGGACCATACACAATCATTGAAGAAACCGGAGAGGTTTTGGGTGTTCGCTGGAACAAGG
ATTTGGGAGCTAATGAACTAGTCAAGTGGAAGAATTTACCGGAAACTGAAGCCACATGGGAAGCTGTCTATCAGATGAATCAACAGTTTCCCACCTTCCACCTTGAGGAC
AAGGTGAATCTAGAACTGAGGGGTATTGTTAAAGAGGGCGGCTGTAGCCGTAGGGGGGGGTGTATCCTTCTTGTAAAGAGTGCTGAGGCATTCCAAGCTATCACAGCACA
AATCCAAGTGTCTTTTTTTGACATCATTCAGCCAAGAAAAGCAAGAAAACACTTTGGACCTCATCCAGAGGCATTCCAAGCTATCACAGCACAAATCCAAGTGTCTTTTT
TTGACATCATTCAGCCAAGAAAAGCAAGAAAACACTTTGGACCTCATCCAGAGGCATTCCTGCTTGTGGCAAAGGAGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGAAATCGAGTACGAGACAGAAGATATGGTATTCCTGAAAATCAAGTACAAGAGTTGAAGTTCAAGGTAGGAGATGAAGTATACCTGAAGCTCAGACCTTATAG
GCAGAGGTCCTTAGCTCGAAAAAGATGTGAAAAGCTAGCACCAAAATTCTATGGACCATACACAATCATTGAAGAAACCGGAGAGGTTTTGGGTGTTCGCTGGAACAAGG
ATTTGGGAGCTAATGAACTAGTCAAGTGGAAGAATTTACCGGAAACTGAAGCCACATGGGAAGCTGTCTATCAGATGAATCAACAGTTTCCCACCTTCCACCTTGAGGAC
AAGGTGAATCTAGAACTGAGGGGTATTGTTAAAGAGGGCGGCTGTAGCCGTAGGGGGGGGTGTATCCTTCTTGTAAAGAGTGCTGAGGCATTCCAAGCTATCACAGCACA
AATCCAAGTGTCTTTTTTTGACATCATTCAGCCAAGAAAAGCAAGAAAACACTTTGGACCTCATCCAGAGGCATTCCAAGCTATCACAGCACAAATCCAAGTGTCTTTTT
TTGACATCATTCAGCCAAGAAAAGCAAGAAAACACTTTGGACCTCATCCAGAGGCATTCCTGCTTGTGGCAAAGGAGCGTTGA
Protein sequenceShow/hide protein sequence
MERNRVRDRRYGIPENQVQELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYTIIEETGEVLGVRWNKDLGANELVKWKNLPETEATWEAVYQMNQQFPTFHLED
KVNLELRGIVKEGGCSRRGGCILLVKSAEAFQAITAQIQVSFFDIIQPRKARKHFGPHPEAFQAITAQIQVSFFDIIQPRKARKHFGPHPEAFLLVAKER