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CSPI04G10070 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G10070
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr4:8102153..8102443
RNA-Seq ExpressionCSPI04G10070
SyntenyCSPI04G10070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033904.1 uncharacterized protein E6C27_scaffold43059G00950 [Cucumis melo var. makuwa]1.2e-1150Show/hide
Query:  LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        LLI    D L + DA  P+ +  +L Y+LFQ SHVPDI+H++R  + +R+FD EDVN S EG  +P  +  R+INTLTAE  AL
Subjt:  LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

KAA0062797.1 uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa]2.0e-1149.45Show/hide
Query:  VSRAF--LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        +SR F  LL+   VD L + D   PN +   L Y+LFQ SHVPDI+H++RP K  R+FD +DV+ ++EG  +  G+A RIINTLT E  AL
Subjt:  VSRAF--LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

KAE8651849.1 hypothetical protein Csa_006761 [Cucumis sativus]4.3e-1457.14Show/hide
Query:  AFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINT
        + LL +++  H   DAL  N +   L YRLFQ SHVP+IKH ++P +EAR+FDSEDVN+SSEGI IP GVA +IIN+
Subjt:  AFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINT

KGN53793.1 hypothetical protein Csa_015153 [Cucumis sativus]6.1e-4596.88Show/hide
Query:  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLR RLLGYRLFQSSHVPDIKHNVRPF+EARIFDSE+VNISSEGICIPSGVALRIINTLTAEFNAL
Subjt:  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

TYK19780.1 uncharacterized protein E5676_scaffold307G00040 [Cucumis melo var. makuwa]1.2e-1144.68Show/hide
Query:  CEEAVSRAFLLIIHTVDHLF--VDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        C +    A LL+IH    +   VDAL P+ +   L YRLFQ SHV +I+H++RP +   +FD+EDV+ + EG  +  G+A RIIN LT E +AL
Subjt:  CEEAVSRAFLLIIHTVDHLF--VDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

TrEMBL top hitse value%identityAlignment
A0A0A0KW57 Uncharacterized protein2.9e-4596.88Show/hide
Query:  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLR RLLGYRLFQSSHVPDIKHNVRPF+EARIFDSE+VNISSEGICIPSGVALRIINTLTAEFNAL
Subjt:  MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

A0A5A7SRT0 Uncharacterized protein5.6e-1250Show/hide
Query:  LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        LLI    D L + DA  P+ +  +L Y+LFQ SHVPDI+H++R  + +R+FD EDVN S EG  +P  +  R+INTLTAE  AL
Subjt:  LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

A0A5A7THX8 Uncharacterized protein1.2e-1147.44Show/hide
Query:  LIIHTVDHLFV--DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLT
        L+IH   ++    DA +P+ +A  L YRLFQ SHVP++KH+ RP++  R+FD+ D+N S+EG  +P  +A RII+TLT
Subjt:  LIIHTVDHLFV--DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLT

A0A5A7V746 Uncharacterized protein9.6e-1249.45Show/hide
Query:  VSRAF--LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        +SR F  LL+   VD L + D   PN +   L Y+LFQ SHVPDI+H++RP K  R+FD +DV+ ++EG  +  G+A RIINTLT E  AL
Subjt:  VSRAF--LLIIHTVDHLFV-DALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

A0A5D3D8I7 Uncharacterized protein5.6e-1244.68Show/hide
Query:  CEEAVSRAFLLIIHTVDHLF--VDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL
        C +    A LL+IH    +   VDAL P+ +   L YRLFQ SHV +I+H++RP +   +FD+EDV+ + EG  +  G+A RIIN LT E +AL
Subjt:  CEEAVSRAFLLIIHTVDHLF--VDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCAAATGTGAGGAAGCCGTTTCAAGAGCGTTTCTGCTCATCATTCATACAGTCGACCATCTATTCGTAGATGCTCTTAAACCAAATCTAAGGGCTCGGTTGCT
CGGCTATAGGCTATTCCAGAGCTCCCATGTTCCTGATATTAAACATAATGTACGGCCTTTTAAGGAAGCTCGAATATTTGATTCAGAAGATGTCAATATATCTTCTGAAG
GAATTTGTATTCCTAGTGGTGTTGCCTTACGAATTATCAACACTTTAACTGCAGAATTCAATGCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCAAATGTGAGGAAGCCGTTTCAAGAGCGTTTCTGCTCATCATTCATACAGTCGACCATCTATTCGTAGATGCTCTTAAACCAAATCTAAGGGCTCGGTTGCT
CGGCTATAGGCTATTCCAGAGCTCCCATGTTCCTGATATTAAACATAATGTACGGCCTTTTAAGGAAGCTCGAATATTTGATTCAGAAGATGTCAATATATCTTCTGAAG
GAATTTGTATTCCTAGTGGTGTTGCCTTACGAATTATCAACACTTTAACTGCAGAATTCAATGCTCTGTGA
Protein sequenceShow/hide protein sequence
MEFKCEEAVSRAFLLIIHTVDHLFVDALKPNLRARLLGYRLFQSSHVPDIKHNVRPFKEARIFDSEDVNISSEGICIPSGVALRIINTLTAEFNAL