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CSPI04G10300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G10300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationChr4:8367200..8368290
RNA-Seq ExpressionCSPI04G10300
SyntenyCSPI04G10300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG99972.1 hypothetical protein Prudu_009845 [Prunus dulcis]1.0e-2055.56Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ---------------SLYGFKQAPRTWFERFTSYLFTLGSVASK
        M EE  AL AQGTW LV      N+VGCKWV+R K N DGSIARHKARLVAKG+ Q               SLYG KQAPR W ERFTS+L +LG  AS 
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ---------------SLYGFKQAPRTWFERFTSYLFTLGSVASK

Query:  SNASFNIY
        ++ S  I+
Subjt:  SNASFNIY

KAA0057165.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-2656.69Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY
        M EEFNALQAQ TW LV   PSMN+VGCKWVFR KYN +G+IARHK RLVAKGYHQ                         SLYG KQAPR WFERF SY
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY

Query:  LFTLGSVASKSNASFNIYVVLPPLEYI
        LFTL  VAS ++ S  I  V   L Y+
Subjt:  LFTLGSVASKSNASFNIYVVLPPLEYI

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.4e-3059.12Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY
        M EEFNALQAQGTWSLV   PSMN+VGCKWVFR KYN DG+IARHKARLVAKGYHQ                         SLYG KQAPR WFERFTSY
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY

Query:  LFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD
        LFTLG VAS ++ S  I  V   L Y+    +L  DD
Subjt:  LFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD

XP_016902519.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]5.5e-2241.3Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ--------------------------------------------
        M EEFNALQA+GTWSLV   PSMN+VGCKWVFR KYN DG+IARHKARLVAKGY Q                                            
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ--------------------------------------------

Query:  ----------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD
                                     +YG KQAPR WFE FTSYLFTLG VAS ++ S  I  V   L Y+    +L  DD
Subjt:  ----------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD

XP_019155374.1 PREDICTED: uncharacterized protein LOC109152241 [Ipomoea nil]1.2e-2157.29Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVV
        M +EFNAL    TW LV   P MNI+GCKWVFRTK   DG++ RHKARLVAKG++Q SLYG KQAPR WF+R   +L + G  AS ++ S   YV+
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVV

TrEMBL top hitse value%identityAlignment
A0A2N9EM20 Integrase catalytic domain-containing protein2.6e-2246.26Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------------SLYGFKQAPRTWF
        M EEF ALQ QGTWSLV    + NIVGCKWV++ KYN DG+IAR+KARLVAK +HQ                               S+YG KQAPR WF
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------------SLYGFKQAPRTWF

Query:  ERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKV--ILLTDDPP
        E FTS L  LG +AS S++S  IY     + Y+   V  I+LT + P
Subjt:  ERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKV--ILLTDDPP

A0A2N9EUK7 Integrase catalytic domain-containing protein6.3e-2448.2Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-----------------------SLYGFKQAPRTWFERFTSYLF
        M EEF ALQ QGTWSLV    S NIVGCKWV++ KYN +GSI+R+KARLVAKG+HQ                       S+YG KQAPR WFE FTS L 
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-----------------------SLYGFKQAPRTWFERFTSYLF

Query:  TLGSVASKSNASFNIYVVLPPLEYIFSKV--ILLTDDPP
         LG +AS +++S  IY     + Y+   V  I++T + P
Subjt:  TLGSVASKSNASFNIYVVLPPLEYIFSKV--ILLTDDPP

A0A5A7UZE5 Putative mitochondrial protein6.9e-3159.12Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY
        M EEFNALQAQGTWSLV   PSMN+VGCKWVFR KYN DG+IARHKARLVAKGYHQ                         SLYG KQAPR WFERFTSY
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY

Query:  LFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD
        LFTLG VAS ++ S  I  V   L Y+    +L  DD
Subjt:  LFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD

A0A5D3DQS0 Putative mitochondrial protein2.6e-2241.3Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ--------------------------------------------
        M EEFNALQA+GTWSLV   PSMN+VGCKWVFR KYN DG+IARHKARLVAKGY Q                                            
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ--------------------------------------------

Query:  ----------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD
                                     +YG KQAPR WFE FTSYLFTLG VAS ++ S  I  V   L Y+    +L  DD
Subjt:  ----------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLTDD

A0A5D3DUH6 Putative mitochondrial protein8.0e-2756.69Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY
        M EEFNALQAQ TW LV   PSMN+VGCKWVFR KYN +G+IARHK RLVAKGYHQ                         SLYG KQAPR WFERF SY
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------SLYGFKQAPRTWFERFTSY

Query:  LFTLGSVASKSNASFNIYVVLPPLEYI
        LFTL  VAS ++ S  I  V   L Y+
Subjt:  LFTLGSVASKSNASFNIYVVLPPLEYI

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.3e-0636.71Show/hide
Query:  EFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQSLYGFKQAPRTWFERFTSYLFTLGSV
        E NA +   TW++     + NIV  +WVF  KYN  G+  R+KARLVA+G+ Q      +       R +S+ F L  V
Subjt:  EFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQSLYGFKQAPRTWFERFTSYLFTLGSV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-0644.64Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ
        M EE  +LQ  GT+ LV        + CKWVF+ K + D  + R+KARLV KG+ Q
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ

P92520 Uncharacterized mitochondrial protein AtMg008205.9e-1157.14Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ
        M EE +AL    TW LV    + NI+GCKWVF+TK + DG++ R KARLVAKG+HQ
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-1057.89Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPS-MNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ
        M  E NA     TW LV   PS + IVGC+W+F  KYN DGS+ R+KARLVAKGY+Q
Subjt:  MCEEFNALQAQGTWSLVLCHPS-MNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.7e-1029.45Show/hide
Query:  MCEEFNALQAQGTWSLV-LCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------------------------
        M  E NA     TW LV    PS+ IVGC+W+F  K+N DGS+ R+KARLVAKGY+Q                                           
Subjt:  MCEEFNALQAQGTWSLV-LCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ-------------------------------------------

Query:  ------------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNAS
                                      ++YG KQAPR W+    +YL T+G V S S+ S
Subjt:  ------------------------------SLYGFKQAPRTWFERFTSYLFTLGSVASKSNAS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.1e-1250Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ
        M +E  A++   TW +    P+   +GCKWV++ KYN DG+I R+KARLVAKGY Q
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.2e-1257.14Show/hide
Query:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ
        M EE +AL    TW LV    + NI+GCKWVF+TK + DG++ R KARLVAKG+HQ
Subjt:  MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGAAGAATTCAATGCTCTTCAAGCACAAGGTACTTGGTCTTTAGTCCTTTGCCATCCATCCATGAATATTGTTGGTTGTAAGTGGGTCTTTCGCACCAAATATAA
TCATGATGGCTCAATTGCTCGCCACAAAGCACGCCTAGTTGCCAAAGGGTATCACCAGAGTCTTTATGGCTTCAAACAAGCCCCTCGTACTTGGTTTGAACGCTTTACCT
CTTATCTATTTACTCTGGGTTCTGTTGCTTCAAAGTCAAACGCATCCTTCAATATTTATGTGGTACTCCCACCCTTGGAGTACATTTTCTCAAAGGTGATACTTCTTACC
GATGATCCACCTCAGGATTCATTGCCTTCATCGGCTCTAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGAAGAATTCAATGCTCTTCAAGCACAAGGTACTTGGTCTTTAGTCCTTTGCCATCCATCCATGAATATTGTTGGTTGTAAGTGGGTCTTTCGCACCAAATATAA
TCATGATGGCTCAATTGCTCGCCACAAAGCACGCCTAGTTGCCAAAGGGTATCACCAGAGTCTTTATGGCTTCAAACAAGCCCCTCGTACTTGGTTTGAACGCTTTACCT
CTTATCTATTTACTCTGGGTTCTGTTGCTTCAAAGTCAAACGCATCCTTCAATATTTATGTGGTACTCCCACCCTTGGAGTACATTTTCTCAAAGGTGATACTTCTTACC
GATGATCCACCTCAGGATTCATTGCCTTCATCGGCTCTAATCTAG
Protein sequenceShow/hide protein sequence
MCEEFNALQAQGTWSLVLCHPSMNIVGCKWVFRTKYNHDGSIARHKARLVAKGYHQSLYGFKQAPRTWFERFTSYLFTLGSVASKSNASFNIYVVLPPLEYIFSKVILLT
DDPPQDSLPSSALI