CuGenDBv2

Gene ID	CSPI04G10660
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S28
Genome location	Chr4:8891134..8895514
RNA-Seq Expression	CSPI04G10660
Synteny	CSPI04G10660
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006508 - proteolysis (biological process) GO:0035672 - oligopeptide transmembrane transport (biological process) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0035673 - oligopeptide transmembrane transporter activity (molecular function)
InterPro domains	IPR000289 - Ribosomal protein S28e IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KGN53863.2 hypothetical protein Csa_019174 [Cucumis sativus]

3.9e-25

54.41

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITS
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP     +    + ++                                         
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITS

Query:  ISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPS
               RNRFLACDSVRAANPETLNRDGLVGALPS
Subjt:  ISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPS

PSS07843.1 40S ribosomal protein [Actinidia chinensis var. chinensis]

4.7e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

PWA69348.1 YELLOW STRIPE like 6 [Artemisia annua]

1.2e-15

93.88

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPD T+
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]

4.7e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]

4.7e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KW48 Uncharacterized protein

2.3e-68

98.53

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITS
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLT HLT PADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITS
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITS

Query:  ISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPS
        ISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPS
Subjt:  ISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPS

A0A0A0LPR2 Uncharacterized protein

2.3e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

A0A1S3CD61 40S ribosomal protein S28-1

2.3e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

A0A2U1N763 YELLOW STRIPE like 6

6.0e-16

93.88

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPD T+
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN

A0A6J1HTG7 40S ribosomal protein S28-1

2.3e-15

100

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

SwissProt top hits

e value

%identity

Alignment

P34789 40S ribosomal protein S28-2

3.5e-13

86.67

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

P46302 40S ribosomal protein S28

6.4e-15

88.89

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q6PBK3 40S ribosomal protein S28

6.9e-09

73.17

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Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q90YP3 40S ribosomal protein S28

6.9e-09

73.17

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Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q9SR73 40S ribosomal protein S28-1

1.2e-13

88.89

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Arabidopsis top hits

e value

%identity

Alignment

AT3G10090.1 Nucleic acid-binding, OB-fold-like protein

8.6e-15

88.89

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein

8.6e-15

88.89

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

AT5G64140.1 ribosomal protein S28

2.5e-14

86.67

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Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Sequences

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CDS sequence

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ATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTTATGGGGCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTA
CATCATGAGGAATGTCAAGGGACCTGACTTGACCAACCATCTCACGGCACCAGCTGACGACCAGCAACACCTGTGTGAAATTACCATCCTGCTAGGGATATTCTTTATTT
CGAGTGAAGGGCCGGGCTCCAGATCTTTCCTTTTTGCCAATTTCTCCATAAACTTCATCGCTTCACCTCTAATTACATCGATCTCTACTTTCTCACATTTCAGAAATCGA
TTTCTTGCGTGTGATTCTGTGAGGGCTGCAAATCCTGAAACCCTAAACAGGGACGGACTAGTAGGGGCTTTGCCGTCGGTGAGTCTTCGGATCAGGAGACAAATTCAGCT
TCTGGATAACGATTTTTGTAGGCTGTAA

mRNA sequence

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Protein sequence

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MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNR
FLACDSVRAANPETLNRDGLVGALPSVSLRIRRQIQLLDNDFCRL

CSPI04G10660 (gene) of Cucumber (PI 183967) v1 genome