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CSPI04G10830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G10830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationChr4:9113254..9113631
RNA-Seq ExpressionCSPI04G10830
SyntenyCSPI04G10830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053238.1 uncharacterized protein E6C27_scaffold102G00230 [Cucumis melo var. makuwa]4.0e-0869.57Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

KAA0054587.1 KRAB-A domain-containing protein 2-like [Cucumis melo var. makuwa]4.9e-0660.87Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V E+ +HGA+EIASL+  N+FK+  QRLK YY+DEN IK+ VDLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

KGN53867.1 hypothetical protein Csa_019118 [Cucumis sativus]2.2e-27100Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV
        MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV

TYJ97634.1 uncharacterized protein E5676_scaffold469G00180 [Cucumis melo var. makuwa]1.8e-0869.57Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

TYK25881.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.5e-0766.67Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL
        +VN++F HGA+EIASLDE N FK+ RQRLKAYY+D++ IKV +DL
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL

TrEMBL top hitse value%identityAlignment
A0A0A0KZS1 Uncharacterized protein1.1e-27100Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV
        MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV

A0A5A7UDM6 RT_RNaseH_2 domain-containing protein1.9e-0869.57Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

A0A5D3BEY0 Uncharacterized protein8.7e-0969.57Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

A0A5D3DQC6 Retrovirus-related Pol polyprotein from transposon 17.67.3e-0866.67Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL
        +VN++F HGA+EIASLDE N FK+ RQRLKAYY+D++ IKV +DL
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL

A0A5D3DV18 KRAB-A domain-containing protein 2-like2.4e-0660.87Show/hide
Query:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK
        +V E+ +HGA+EIASL+  N+FK+  QRLK YY+DEN IK+ VDLK
Subjt:  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAA
TCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAA
TCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG
Protein sequenceShow/hide protein sequence
MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV