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CSPI04G11760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G11760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:10037586..10038128
RNA-Seq ExpressionCSPI04G11760
SyntenyCSPI04G11760
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0015074 - DNA integration (biological process)
GO:0030036 - actin cytoskeleton organization (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036990.1 protein SDA1-like protein isoform X2 [Cucumis melo var. makuwa]3.2e-6374Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEFEEGD V+LK+RPYRQVS+R++RNEKLSPKYFG Y ++K+IG VAYRLELP  ATIHPVFH+SQLK+AFG+  N +EL P++T  HEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKL
        E +GY+KN+ G WEVLMSWKGLP HEATWE YDDFQQSFPD+HLEDKVK+
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKL

KAA0060543.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-6065.32Show/hide
Query:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE
        KRR VEF+EGD VFLK+RPYRQ SLR+KRNEKLSPKYFGPY +++RIG+VAY+LELPAAA IHPVFHVSQLKKA G    ++ L P++ ANHEW   P+E
Subjt:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE

Query:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK
         Y YRKN  T  WE L+SWKGLP HEATWES +D +  FPDFHLEDKV L+ E + RPPI+  Y R+  +K +
Subjt:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK

KAA0066077.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]9.2e-7170.29Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEFEEGD V+LK+RPYRQVS+R++RNEKLSPKYFGPY ++K+IG VAYRLELP  ATIHPVFH+SQLK+AFG+  N + L P++T  HEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKKD
        E +GY+KN  G WEVLMSWKGLP HEATWE Y DFQQSF D+H+ED+ KL+ ECNVRPPIIHQY RR+  + K D
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKKD

TYK00786.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-6065.32Show/hide
Query:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE
        KRR VEF+EGD VFLK+RPYRQ SLR+KRNEKLSPKYFGPY +++RIG+VAY+LELPAAA IHPVFHVSQLKKA G    ++ L P++ ANHEW   P+E
Subjt:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE

Query:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK
         Y YRKN  T  WE L+SWKGLP HEATWES +D +  FPDFHLEDKV L+ E + RPPI+  Y R+  +K +
Subjt:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK

TYK07930.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.6e-7071.26Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEF+EGD V+LK+RPYRQV++R++RNEKL PKYFGPY ++KRIG VAY+LELP +  IH VF + QLK+AFGE  N ++L P++T NHEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKK
        E YGYRKN+ G WE+LMSWKGLP HEATWE YDDFQQSFPD+HLEDKVKL+RECNVRPPIIHQY RR+    KK
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKK

TrEMBL top hitse value%identityAlignment
A0A5A7T0V2 Protein SDA1-like protein isoform X21.5e-6374Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEFEEGD V+LK+RPYRQVS+R++RNEKLSPKYFG Y ++K+IG VAYRLELP  ATIHPVFH+SQLK+AFG+  N +EL P++T  HEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKL
        E +GY+KN+ G WEVLMSWKGLP HEATWE YDDFQQSFPD+HLEDKVK+
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKL

A0A5A7UX59 Ty3/gypsy retrotransposon protein3.5e-6065.32Show/hide
Query:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE
        KRR VEF+EGD VFLK+RPYRQ SLR+KRNEKLSPKYFGPY +++RIG+VAY+LELPAAA IHPVFHVSQLKKA G    ++ L P++ ANHEW   P+E
Subjt:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE

Query:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK
         Y YRKN  T  WE L+SWKGLP HEATWES +D +  FPDFHLEDKV L+ E + RPPI+  Y R+  +K +
Subjt:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK

A0A5A7VG68 Transposon Tf2-9 polyprotein4.5e-7170.29Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEFEEGD V+LK+RPYRQVS+R++RNEKLSPKYFGPY ++K+IG VAYRLELP  ATIHPVFH+SQLK+AFG+  N + L P++T  HEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKKD
        E +GY+KN  G WEVLMSWKGLP HEATWE Y DFQQSF D+H+ED+ KL+ ECNVRPPIIHQY RR+  + K D
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKKD

A0A5D3BRA0 Ty3/gypsy retrotransposon protein3.5e-6065.32Show/hide
Query:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE
        KRR VEF+EGD VFLK+RPYRQ SLR+KRNEKLSPKYFGPY +++RIG+VAY+LELPAAA IHPVFHVSQLKKA G    ++ L P++ ANHEW   P+E
Subjt:  KRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQE

Query:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK
         Y YRKN  T  WE L+SWKGLP HEATWES +D +  FPDFHLEDKV L+ E + RPPI+  Y R+  +K +
Subjt:  TYGYRKNE-TGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEK

A0A5D3C9B5 Transposon Tf2-6 polyprotein7.6e-7171.26Show/hide
Query:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ
        +KRRHVEF+EGD V+LK+RPYRQV++R++RNEKL PKYFGPY ++KRIG VAY+LELP +  IH VF + QLK+AFGE  N ++L P++T NHEW AVP 
Subjt:  MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQ

Query:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKK
        E YGYRKN+ G WE+LMSWKGLP HEATWE YDDFQQSFPD+HLEDKVKL+RECNVRPPIIHQY RR+    KK
Subjt:  ETYGYRKNETGGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAAGACATGTCGAATTCGAAGAAGGAGATCAAGTGTTCCTAAAAATTAGGCCATACAGACAGGTATCCTTACGGAGAAAGAGGAATGAGAAGCTATCACCGAA
GTATTTCGGGCCTTATATGATAGTGAAGCGAATTGGTCAGGTGGCATATCGGCTGGAACTACCAGCGGCAGCAACAATCCACCCTGTGTTCCATGTGTCACAGTTGAAAA
AAGCTTTTGGGGAGAGTGCGAATAGCGAAGAGCTGTTGCCGTTTTTGACTGCAAATCACGAGTGGAAGGCCGTGCCACAAGAGACTTACGGTTATAGAAAAAACGAAACA
GGAGGGTGGGAGGTTTTAATGAGTTGGAAAGGTCTGCCGCATCATGAAGCCACATGGGAAAGCTATGACGACTTTCAGCAATCCTTCCCCGATTTCCACCTTGAGGACAA
GGTGAAACTGGACCGGGAATGCAATGTTAGACCACCCATCATACACCAATACAGTAGGAGAAGGAACAGGAAAGAGAAGAAGGACGGGAAGTTGGTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAAGACATGTCGAATTCGAAGAAGGAGATCAAGTGTTCCTAAAAATTAGGCCATACAGACAGGTATCCTTACGGAGAAAGAGGAATGAGAAGCTATCACCGAA
GTATTTCGGGCCTTATATGATAGTGAAGCGAATTGGTCAGGTGGCATATCGGCTGGAACTACCAGCGGCAGCAACAATCCACCCTGTGTTCCATGTGTCACAGTTGAAAA
AAGCTTTTGGGGAGAGTGCGAATAGCGAAGAGCTGTTGCCGTTTTTGACTGCAAATCACGAGTGGAAGGCCGTGCCACAAGAGACTTACGGTTATAGAAAAAACGAAACA
GGAGGGTGGGAGGTTTTAATGAGTTGGAAAGGTCTGCCGCATCATGAAGCCACATGGGAAAGCTATGACGACTTTCAGCAATCCTTCCCCGATTTCCACCTTGAGGACAA
GGTGAAACTGGACCGGGAATGCAATGTTAGACCACCCATCATACACCAATACAGTAGGAGAAGGAACAGGAAAGAGAAGAAGGACGGGAAGTTGGTTATGTAA
Protein sequenceShow/hide protein sequence
MKRRHVEFEEGDQVFLKIRPYRQVSLRRKRNEKLSPKYFGPYMIVKRIGQVAYRLELPAAATIHPVFHVSQLKKAFGESANSEELLPFLTANHEWKAVPQETYGYRKNET
GGWEVLMSWKGLPHHEATWESYDDFQQSFPDFHLEDKVKLDRECNVRPPIIHQYSRRRNRKEKKDGKLVM