; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G12020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr4:10338577..10339505
RNA-Seq ExpressionCSPI04G12020
SyntenyCSPI04G12020
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-4260.13Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GFFKG W+V+GEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FI GRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]1.5e-4260.13Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GFFKG W+V+GEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FI GRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]1.9e-4563.87Show/hide
Query:  SGIKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-------------------------
        S I  +EVRRVLFSMD GKAPGPDGYS+GFFKG WTVVGE FCDVV+HFFET  FPQGVN T ITLIPK N ADR                         
Subjt:  SGIKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-------------------------

Query:  ---------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                 GNQ  FIPGRSIIDNILLCQELVG YHL+ GKP CTMKVDLQK YD
Subjt:  ---------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

XP_031745634.1 uncharacterized protein LOC116406053 [Cucumis sativus]3.9e-4664.9Show/hide
Query:  GKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-----------------------------
        G+EVRRVLFSMD GKAPGPDGYS+GFFKG WTVVGE FCDVV+HFFET  FPQGVN T ITLIPK N ADR                             
Subjt:  GKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-----------------------------

Query:  -----GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
             GNQ  FIPGRSIIDNILLCQELVG YHL+ GKP CTMKVDLQK YD
Subjt:  -----GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]9.1e-4361.94Show/hide
Query:  SGIKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-------------------------
        S I  +EVR VLFSMD GKAPGPDGYS+GFFKG WTVV E FCDVV+HFFET  FPQGVN T ITLIPK N ADR                         
Subjt:  SGIKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR-------------------------

Query:  ---------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                 GNQ  FIPGRSIIDNILLCQELVG YHL  GKP CTMKVDL K YD
Subjt:  ---------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932257.5e-4360.13Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GFFKG W+V+GEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FI GRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

A0A5A7TZS0 Reverse transcriptase domain-containing protein6.3e-4259.48Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GF+KG W+VVGEDFC+ V+HFFET   P GVN T ITLIPK   A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FIPGRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

A0A5A7UP65 Reverse transcriptase7.5e-4360.13Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GFFKG W+V+GEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FI GRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

A0A5A7UV01 F17F8.56.3e-4259.48Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+  GFFKG W+VVGEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS F+PGRSII+NILLCQELVGGYHLN+GKP CT+KVD QK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

A0A5D3D7P6 Reverse transcriptase7.5e-4360.13Show/hide
Query:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------
        I  +EVRRVLFSMDSGKAPGPDG+S+GFFKG W+V+GEDFCD V+HFFET   P GVN T ITLIPK N A+R                           
Subjt:  IKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADR---------------------------

Query:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
                NQS FI GRSII+NILLCQELVGGYHLN+GKP CT+KVDLQK YD
Subjt:  -------GNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein3.7e-0724.83Show/hide
Query:  EVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSND----------------------------------
        E+ + L  M   K+PG DG +I FF+  W  +G DF  V+   F+    P       ++L+PK  D                                  
Subjt:  EVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSND----------------------------------

Query:  ADRGNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD
            +QS  +PGR+I DN+ L ++L+  +   TG     + +D +K +D
Subjt:  ADRGNQSDFIPGRSIIDNILLCQELVGGYHLNTGKPWCTMKVDLQKTYD

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases8.0e-0546.67Show/hide
Query:  QSDFIPGRSIIDNILLCQELVGGYHLNTG-KPWCTMKVDLQKTYD
        Q+ FIPGR   DNI+  QE V       G K W  +K+DL+K YD
Subjt:  QSDFIPGRSIIDNILLCQELVGGYHLNTG-KPWCTMKVDLQKTYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAATCGTCCAAGGAAGCTATGGCGGTAAAGAGAAGGGCGTTGACGAGCCTTCAACGTGTTCATGACTTGGCGGCTAGTGAACGCAGAGCGGTGGTGGCGAATGG
TGACCTAACTATAAGGATGAAACGGTCTGAAATTGAACCGGTCGAGATGAACCACGGTCCAATTGGGTTTGGTGATCACGAACATGGAACGCTTGGGCCAAATCAGGAGC
AAAATGTGACCTGTGAACAGTACTTTGGGCCGATGGATATTGGACCTTCAAAGAAGGAGATCTTACATGATGGGCCTAATACAGCTGACGGACCTTCCAGAAAGGGGTCT
AGGATGAAGGCAACTAAAAGGGTTTCTAAGATTGGGCCGGTTGATGGAAGGTTGAATGGTGGGTCGGGAATAAAAGGGAAGGAAGTGAGACGCGTTCTATTTTCCATGGA
TAGTGGAAAGGCTCCAGGCCCTGATGGGTATTCGATTGGCTTCTTCAAAGGAGATTGGACGGTGGTTGGAGAGGATTTTTGTGATGTCGTCATTCACTTCTTTGAGACTA
AAAACTTCCCTCAAGGAGTGAATATGACTACTATTACTCTTATTCCTAAAAGTAATGATGCTGATCGTGGAAACCAGTCAGATTTCATCCCTGGTAGGAGTATTATTGAC
AATATTCTTCTTTGTCAGGAGCTTGTAGGGGGTTACCATTTGAACACAGGTAAACCTTGGTGCACTATGAAGGTTGACCTCCAAAAAACTTATGATCTGTTAATTGGGAT
TTCCTCTTTGGCCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAATCGTCCAAGGAAGCTATGGCGGTAAAGAGAAGGGCGTTGACGAGCCTTCAACGTGTTCATGACTTGGCGGCTAGTGAACGCAGAGCGGTGGTGGCGAATGG
TGACCTAACTATAAGGATGAAACGGTCTGAAATTGAACCGGTCGAGATGAACCACGGTCCAATTGGGTTTGGTGATCACGAACATGGAACGCTTGGGCCAAATCAGGAGC
AAAATGTGACCTGTGAACAGTACTTTGGGCCGATGGATATTGGACCTTCAAAGAAGGAGATCTTACATGATGGGCCTAATACAGCTGACGGACCTTCCAGAAAGGGGTCT
AGGATGAAGGCAACTAAAAGGGTTTCTAAGATTGGGCCGGTTGATGGAAGGTTGAATGGTGGGTCGGGAATAAAAGGGAAGGAAGTGAGACGCGTTCTATTTTCCATGGA
TAGTGGAAAGGCTCCAGGCCCTGATGGGTATTCGATTGGCTTCTTCAAAGGAGATTGGACGGTGGTTGGAGAGGATTTTTGTGATGTCGTCATTCACTTCTTTGAGACTA
AAAACTTCCCTCAAGGAGTGAATATGACTACTATTACTCTTATTCCTAAAAGTAATGATGCTGATCGTGGAAACCAGTCAGATTTCATCCCTGGTAGGAGTATTATTGAC
AATATTCTTCTTTGTCAGGAGCTTGTAGGGGGTTACCATTTGAACACAGGTAAACCTTGGTGCACTATGAAGGTTGACCTCCAAAAAACTTATGATCTGTTAATTGGGAT
TTCCTCTTTGGCCTGCTGA
Protein sequenceShow/hide protein sequence
MKQSSKEAMAVKRRALTSLQRVHDLAASERRAVVANGDLTIRMKRSEIEPVEMNHGPIGFGDHEHGTLGPNQEQNVTCEQYFGPMDIGPSKKEILHDGPNTADGPSRKGS
RMKATKRVSKIGPVDGRLNGGSGIKGKEVRRVLFSMDSGKAPGPDGYSIGFFKGDWTVVGEDFCDVVIHFFETKNFPQGVNMTTITLIPKSNDADRGNQSDFIPGRSIID
NILLCQELVGGYHLNTGKPWCTMKVDLQKTYDLLIGISSLAC