; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G12050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:10383085..10383795
RNA-Seq ExpressionCSPI04G12050
SyntenyCSPI04G12050
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-9675.11Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENP+ WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLP+MAESVL+DAF+TGLE SLQAEVISRHPQ+LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +K  PRKT+F MKQITIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

KAA0041186.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-9575.31Show/hide
Query:  MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSA
        MF GENP  WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSA
Subjt:  MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSA

Query:  PLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPI
        PLP+MAESVL+DAF+T LE SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G  EK  PRKT+F MKQITIPI
Subjt:  PLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPI

Query:  KGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
        KG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  KGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

KAA0051136.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-9574.68Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDW+RWS++RKKVESWEDLK RM +FFRDSGQKSL VRLIRI+QDESYN+YVKKF+ Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLP M ESVL+DAF+TGLE SLQAEVISRHPQ LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +K  PRKT+F MKQITIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         + K EP V+RLS  EFRARLD+GLCFRCN+KYSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

TYK02434.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-9675.1Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKK V Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITI
        SAPLP++AESVL+DAF+TGLE SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G  EK  PRKT+F MKQITI
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITI

Query:  PIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
        PIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  PIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]1.2e-9474.26Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNLPE EKVKVAVVSF QDEVDWYRWS++R+KVESWEDLKERM  FF+D+GQKSL  RLIRIEQD SYNDYVKKFV Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEWTS-SITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLPHM ESVL DAF+TGLE +LQAEV+SR+P +LEECM+EAQLVNDRNLAL+ +KAE    +  KG   +NK     EK + RKTEF +KQ+TIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEWTS-SITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         Y KSEP V+RLSD EFRARLDKGLCF+CNE+YSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein1.8e-9675.11Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENP+ WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLP+MAESVL+DAF+TGLE SLQAEVISRHPQ+LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +K  PRKT+F MKQITIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

A0A5A7TGL5 Retrotransposon protein1.5e-9575.31Show/hide
Query:  MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSA
        MF GENP  WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKKFV YSA
Subjt:  MFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSA

Query:  PLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPI
        PLP+MAESVL+DAF+T LE SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G  EK  PRKT+F MKQITIPI
Subjt:  PLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPI

Query:  KGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
        KG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  KGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

A0A5A7UM77 Ty3/gypsy retrotransposon protein9.9e-9574.26Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNL E+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+Q+ SYN+YVKKFV Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLP+MAESVL+DAF+TGLE SLQAEVISRHPQ+LE+CM+EAQLVNDRN ALKL+K E   +    GG    K  G  +K  PRKT+F MKQITIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAE-WTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

A0A5D3BTE3 Retrotransposon protein1.4e-9675.1Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDWYRWS++RKKVESWEDLK RM +FFRDSGQKSL  RLIRI+QD SYN+YVKK V Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITI
        SAPLP++AESVL+DAF+TGLE SLQAEVISRHPQ+LEECM+EAQLVNDRNLALKL K     AEW     +GG    K  G  EK  PRKT+F MKQITI
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAK-----AEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITI

Query:  PIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
        PIKG + K EP V+RLSD EFRARLD+GLCFRCN+KYSPGH
Subjt:  PIKGRYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

A0A5D3BVL1 Ty3/gypsy retrotransposon protein2.0e-9574.68Show/hide
Query:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY
        M MF GENPE WV+RAE FF+INNLPE+EKVKVAVVSF QDEVDW+RWS++RKKVESWEDLK RM +FFRDSGQKSL VRLIRI+QDESYN+YVKKF+ Y
Subjt:  MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQY

Query:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG
        SAPLP M ESVL+DAF+TGLE SLQAEVISRHPQ LE+CM+EAQLVNDRNLALKL+K E   +   +GG    K  G  +K  PRKT+F MKQITIPIKG
Subjt:  SAPLPHMAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEW-TSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKG

Query:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH
         + K EP V+RLS  EFRARLD+GLCFRCN+KYSPGH
Subjt:  RYPKSEPLVRRLSDTEFRARLDKGLCFRCNEKYSPGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding1.9e-0522.92Show/hide
Query:  ENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPH
        EN    +   E +F  NN+PE E++++   +   D   W +    +    SW++ K  M +  + + + +       I+Q+ S  +Y ++F         
Subjt:  ENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPH

Query:  MAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRN
        +    L   F+ GL+ SLQ  V    P  + + M  AQ + + N
Subjt:  MAESVLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTTCACTGGAGAGAATCCTGAGTTGTGGGTTTTTAGAGCAGAGCCTTTCTTCGACATTAACAATTTGCCAGAGAATGAGAAGGTTAAGGTGGCTGTTGTCAG
TTTCAGTCAAGACGAAGTTGATTGGTACCGTTGGAGCAACCACCGGAAAAAGGTCGAATCATGGGAAGATCTAAAGGAGAGAATGATTAAGTTCTTTAGAGACTCCGGAC
AGAAGAGTCTGAGCGTCAGGTTGATTCGAATAGAACAGGATGAATCGTATAACGACTATGTTAAGAAATTCGTCCAATATTCAGCTCCATTGCCACACATGGCCGAAAGT
GTACTCCTAGATGCATTCATGACAGGACTAGAATCGTCCCTTCAAGCCGAAGTCATTAGTAGACACCCTCAATCCTTAGAGGAGTGTATGAAAGAGGCGCAGCTGGTGAA
TGACAGGAACCTAGCACTGAAATTAGCCAAAGCAGAATGGACAAGTAGTATCACTAAAGGAGGTGACTATTCCAACAAGAATCAAGGCAGTACAGAGAAAAATATGCCCA
GAAAGACAGAATTCGCTATGAAACAGATCACCATACCGATCAAGGGAAGATATCCAAAAAGTGAGCCACTAGTGAGAAGACTCTCAGACACCGAATTCCGAGCAAGGTTG
GATAAGGGGTTATGTTTCAGATGTAATGAGAAATATTCCCCTGGACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTTCACTGGAGAGAATCCTGAGTTGTGGGTTTTTAGAGCAGAGCCTTTCTTCGACATTAACAATTTGCCAGAGAATGAGAAGGTTAAGGTGGCTGTTGTCAG
TTTCAGTCAAGACGAAGTTGATTGGTACCGTTGGAGCAACCACCGGAAAAAGGTCGAATCATGGGAAGATCTAAAGGAGAGAATGATTAAGTTCTTTAGAGACTCCGGAC
AGAAGAGTCTGAGCGTCAGGTTGATTCGAATAGAACAGGATGAATCGTATAACGACTATGTTAAGAAATTCGTCCAATATTCAGCTCCATTGCCACACATGGCCGAAAGT
GTACTCCTAGATGCATTCATGACAGGACTAGAATCGTCCCTTCAAGCCGAAGTCATTAGTAGACACCCTCAATCCTTAGAGGAGTGTATGAAAGAGGCGCAGCTGGTGAA
TGACAGGAACCTAGCACTGAAATTAGCCAAAGCAGAATGGACAAGTAGTATCACTAAAGGAGGTGACTATTCCAACAAGAATCAAGGCAGTACAGAGAAAAATATGCCCA
GAAAGACAGAATTCGCTATGAAACAGATCACCATACCGATCAAGGGAAGATATCCAAAAAGTGAGCCACTAGTGAGAAGACTCTCAGACACCGAATTCCGAGCAAGGTTG
GATAAGGGGTTATGTTTCAGATGTAATGAGAAATATTCCCCTGGACATTGA
Protein sequenceShow/hide protein sequence
MSMFTGENPELWVFRAEPFFDINNLPENEKVKVAVVSFSQDEVDWYRWSNHRKKVESWEDLKERMIKFFRDSGQKSLSVRLIRIEQDESYNDYVKKFVQYSAPLPHMAES
VLLDAFMTGLESSLQAEVISRHPQSLEECMKEAQLVNDRNLALKLAKAEWTSSITKGGDYSNKNQGSTEKNMPRKTEFAMKQITIPIKGRYPKSEPLVRRLSDTEFRARL
DKGLCFRCNEKYSPGH