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CSPI04G12120 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12120
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr4:10430880..10431206
RNA-Seq ExpressionCSPI04G12120
SyntenyCSPI04G12120
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]2.4e-4287.38Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMTT YKDWH+ILPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNFIEEK L  
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L +
Subjt:  LDN

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.4e-4287.38Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMTT YKDWH+ILPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNFIEEK L  
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L +
Subjt:  LDN

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]2.4e-4287.38Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMTT YKDWH+ILPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNFIEEK L  
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L +
Subjt:  LDN

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]2.4e-4287.38Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMTT YKDWH+ILPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNFIEEK L  
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L +
Subjt:  LDN

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]2.4e-4287.38Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMTT YKDWH+ILPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNFIEEK L  
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L +
Subjt:  LDN

TrEMBL top hitse value%identityAlignment
A0A5A7T1X2 Ribonuclease H1.1e-4083.5Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRI+EKMT  YKDWH++LPFALHGYRTSVRTST ATPFSLVYGME VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNF+EEK LA 
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L++
Subjt:  LDN

A0A5A7T570 Pol polyprotein4.5e-4284.47Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN A+E ANKNIKRIIEKMT  YKDWH++LPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNF+EEK LA 
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L++
Subjt:  LDN

A0A5A7T7R4 Ribonuclease H4.5e-4285.44Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMT  YKDWH++LPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNF+EEK LA 
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L++
Subjt:  LDN

A0A5D3CXE2 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H6.5e-4184.47Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN AVE ANKNIKRIIEKMT  YKDWH++LPFALHGYRTSVRTSTGAT FSLVYGME VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNF+EEK LA 
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L++
Subjt:  LDN

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H4.5e-4284.47Show/hide
Query:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP
        MN A+E ANKNIKRIIEKMT  YKDWH++LPFALHGYRTSVRTSTGATPFSLVYGME+VLPLEV+IPSLRVLMEAKL+EA+WIRGRYEQLNF+EEK LA 
Subjt:  MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAP

Query:  LDN
        L++
Subjt:  LDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTGGCAGTTGAGACAGCCAACAAAAATATCAAAAGAATCATTGAGAAGATGACAACAATATACAAAGATTGGCATAAAATTTTACCGTTTGCACTGCATGGATA
TCGCACATCAGTTCGTACTTCAACAGGGGCAACACCATTTTCTTTGGTTTATGGTATGGAATCTGTCCTACCTTTAGAAGTTAAAATACCTTCATTGAGAGTTCTCATGG
AAGCTAAGTTAAATGAAGCAAAATGGATACGAGGTCGTTATGAGCAATTGAATTTCATTGAAGAAAAATGTTTGGCACCATTGGACAACTTTATCAAAGAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTGGCAGTTGAGACAGCCAACAAAAATATCAAAAGAATCATTGAGAAGATGACAACAATATACAAAGATTGGCATAAAATTTTACCGTTTGCACTGCATGGATA
TCGCACATCAGTTCGTACTTCAACAGGGGCAACACCATTTTCTTTGGTTTATGGTATGGAATCTGTCCTACCTTTAGAAGTTAAAATACCTTCATTGAGAGTTCTCATGG
AAGCTAAGTTAAATGAAGCAAAATGGATACGAGGTCGTTATGAGCAATTGAATTTCATTGAAGAAAAATGTTTGGCACCATTGGACAACTTTATCAAAGAAGACTAA
Protein sequenceShow/hide protein sequence
MNVAVETANKNIKRIIEKMTTIYKDWHKILPFALHGYRTSVRTSTGATPFSLVYGMESVLPLEVKIPSLRVLMEAKLNEAKWIRGRYEQLNFIEEKCLAPLDNFIKED