; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G12350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr4:10733028..10735166
RNA-Seq ExpressionCSPI04G12350
SyntenyCSPI04G12350
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]0.0e+0094.11Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIP DWKLCDDLP+DEVFFTEVMEPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM VQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+DQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]0.0e+0093.95Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        II+GRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIP DWKLCDDLP+DEVFFTEVMEPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM VQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+DQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]0.0e+0093.95Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        II+GRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIP DWKLCDDLP+DEVFFTEVMEPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM VQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+DQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]0.0e+0093.95Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        II+GRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIP DWKLCDDLP+DEVFFTEVMEPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM VQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+DQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]0.0e+0094.11Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIP DWKLCDDLP+DEVFFTEVMEPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM VQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+DQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H0.0e+0083.41Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        IISG LAKWAV+LQQYDIVYI QK IKGQALA+FLADHPIP DWKLC+ LP+DEVFFT+++EPWTMYFDGAARRSGAGAGI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 ALIIGLQ+ALEI VSFI++YGDSKLIINQLSLQYDVKHEDLKPYF YARQLME+FD+VML+HVPR ENKRADALANLATAL MPD+V LNI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
        PLCQ+WI+PP+  ECQE NI  S+LI+EEDW QPIIEYLEHGKLPKDSRHK E+RRRAAHFIYYKGTLYRR LEG+FLRCLG+++S+KAL+E HAGVCGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSG KLQFQLRRMGYYWPKM+QDS+DY KKCE CQYHANFIHQP EPLHP+VASW FEAWGLDLVGPITPKSSAGHSYILAAT+YFS+WAEAI LREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KENV +FIRTHIIYRYGIPHRIVTDNG+QFSNSM+DKLCEKFKF+QYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQE+I EALWAYRTTHRT 
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        T VTPYSLVYGVE  LPLERE  SLRMTVQEGLTTEDNVKLRLQELE LDEKRLEAQQ LECYQARMSKAFDKHVKPRSFQVGDLVL VRRPIITTRH G
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEVYTNGAYKI+D+D L+IG INGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

A0A5A7TZU9 Ribonuclease H1.7e-30677.05Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        +ISGRLAKWA++LQQYDIVYIPQKA+KGQALADFLADHP+P +WKLCDDLP++EV F E MEPW M+FDGAARRSGAG GI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 A IIGLQ+A E G+  IE++GDSKLIINQLS QY+VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
         LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKLP D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQPPEPLHPT+ASWPFEAWGLDLVGPITPKS+AGHSYILA TDYFS+WAEA+ LREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KEN+ +F++THIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF FKQ+KSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM +QEGLTTEDN +LRL+ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEV+TNGAYKIIDQD LRIGPING+FLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

A0A5A7UID6 Ribonuclease H9.8e-30276.43Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        +ISGRLAKWA++LQQYDIVYIPQKA+KGQALADFLADHP+P +WKLCDDLP++EV F E ME W M+FDG ARRSGAG GI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 A IIGLQ+A E G+  IE++GDSKLIINQLS QY VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLAT LT+ +D+ +NI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
         LCQ+WI+P +  + +E ++ + Y+IDEEDWRQPII+YLEHGKLP D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQPPEPLHPT+ASWPFEAWGLDLV PITPKS+AGHSYILA TDYFS+WAEA+ LREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KEN+ +F+RTHIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF FKQYKSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM +Q+GLTTEDN +LRLQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVL VRRPIITTRH G
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEV+TNGAYKIIDQD LRIGPING+FLKK  A
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

A0A5D3BTY1 Ribonuclease H2.5e-30577.05Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        +ISGRLAKWA++LQQYDIVYIPQKA+KGQALADFLADHP+P +WKLCDDLP++EV F E MEPW M+FDGAARRSGAG GI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 A IIGLQ+A E G+  IE++GDSKLIINQLS QY+VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
         LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKLP D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQPPEPLHPT+ASWPFE WGLDLVGPITPKSSAGHSYILA TDYFSRWAEA+ LREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KEN+ +F++T+IIYRYGIPHRIVTDNG+QF+N++MDKLCEKF FKQYKSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLE+E  SLRM++QEGLTT+DN +L LQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEV+TNGAYKIIDQD LRIGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

A0A5D3D1E5 Ribonuclease H1.0e-30677.21Show/hide
Query:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------
        +ISGRLAKWA++LQQYDIVYIPQKA+KGQALADFLADHP+P +WKLCDDLP++EV F E MEPW M+FDGAARRSGAG GI                   
Subjt:  IISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRSGAGAGI-------------------

Query:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI
                 A IIGLQ+A E G+  IE++GDSKLIINQLS QY+VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI
Subjt:  ---------ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNI

Query:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA
         LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKLP D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGA
Subjt:  PLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGA

Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        HQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQPPEPLHPT+ASWPFEAWGLDLVGPITPKS+AGHSYILA TDYFS+WAEA+ LREAK
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP
        KEN+ +F++THIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF FKQ+KSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTP
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTP

Query:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG
        TGVTPYSLVYGVEAVLPLERE  SLRM +QEGLTTEDN +LRLQELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVL VRRPIITTRHTG
Subjt:  TGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTG

Query:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA
        NKFTPKWDGPYIVKEV+TNGAYKIIDQD L+IGPINGKFLKK YA
Subjt:  NKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein7.3e-1227.98Show/hide
Query:  GHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-
        G+ Y+L   D FS W EA   +      V   I   I+ R+GIP  + +DNG  F   +   L  +          Y   ++G  E  N+T+   L K+ 
Subjt:  GHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-

Query:  VSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVLPLERENLSLRMTVQEG--LTTEDN-VKLRLQELEALDEKRLEA-QQALECYQARMSKA
        +    +DW   +  AL   R T     G+TPY ++YG    +            ++ G  L  +DN + +    L+AL+  R +   Q  E Y+      
Subjt:  VSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVLPLERENLSLRMTVQEG--LTTEDN-VKLRLQELEALDEKRLEA-QQALECYQARMSKA

Query:  FDKHVKPRSFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIV
              P  FQVGD VLV        RH      P+W GPY+V
Subjt:  FDKHVKPRSFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIV

P03360 Gag-Pol polyprotein (Fragment)5.2e-1827.97Show/hide
Query:  PFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAA
        P E W +D    IT K   G+ Y+L   D FS W EA   +    + V   +   II R+G+P +I +DNG  F   +  +LCE           Y   +
Subjt:  PFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAA

Query:  NGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE-AVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLE
        +G  E  N+TL   + K+  ++  DW   + +AL   R T     G++P+ ++YG++  V+P    +    +T Q            L+ L+AL   R  
Subjt:  NGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE-AVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLE

Query:  AQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIV-----KEVYTNGAYKIIDQDRLRIGPIN
        A+  L   + ++ +   +  +   FQ GDLV V        +H   +  P+WDGPY V       V   G    I   RL+  P N
Subjt:  AQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIV-----KEVYTNGAYKIIDQDRLRIGPIN

Q5DTZ0 Protein NYNRIN1.9e-1224.28Show/hide
Query:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY
        VH    G HQ        +R +G +WP M     DY + C  C    N I       + P PL  T    P+ +  +++VGP+T  S  GH ++L   D 
Subjt:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY

Query:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMM--------DKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKS
         +RW EA  L+      VA  +  H+  R+G+P R+    G QF+  ++         ++    +  Q+   M + A      A        LK+ +   
Subjt:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMM--------DKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKS

Query:  KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPR
         + W   +     A+R    + T  TP+ ++ G E  L +E     +     EGL  +  +   ++EL  LD     A++A E  +   ++ F +  +  
Subjt:  KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPR

Query:  SFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI
         + VGD VL++  P        N  + KW GP+ + +  +   Y++
Subjt:  SFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI

Q9P2P1 Protein NYNRIN1.7e-1325.72Show/hide
Query:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY
        VH    GAHQ   +   +LR +G +WP M +   DY + C  C    N I       + P PL  T    P+    +++VGP+T  S  GH ++L   D 
Subjt:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY

Query:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYN-----AAANGLAEAFNKTLCNLLKKIVSKSKRD
         +RW EA  L+      VA  +  H+  R+G+P R+    G QF+  ++   C      Q  S   +       ++G    F +     LK+ +    + 
Subjt:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYN-----AAANGLAEAFNKTLCNLLKKIVSKSKRD

Query:  WQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVL--PLERENLSLRMTVQEGLTTEDNVKLRLQELEALDE-KRLEAQQALECYQARMSKAFDKHVKPR
        W   +     A+R    + T  TP+ ++ G E+ L  PL  E  S  +   EGL      K+ +  L+ + E   L  + A +  +   ++ F +  + +
Subjt:  WQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVL--PLERENLSLRMTVQEGLTTEDNVKLRLQELEALDE-KRLEAQQALECYQARMSKAFDKHVKPR

Query:  SFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI
         + VGD VL++  P        N  + KW GP+ + +  +   Y+I
Subjt:  SFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI

Q9TTC1 Gag-Pol polyprotein2.3e-1325.4Show/hide
Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        H    KL   + R  ++ P +     +   KC+ C    N +    EP        P   W +D    + P    G+ Y+L   D FS W EA   +   
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-VSKSKRDWQEKIGEALWAYRTTHRT
           V   I   I+ R+GIP  + +DNG  F   +   L  +          Y   ++G  E  N+T+   L K+ +    +DW   +  AL   R T   
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-VSKSKRDWQEKIGEALWAYRTTHRT

Query:  PTGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEA-QQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRH
          G+TPY +++G    +    E +          +  D   +    L+AL+  R +   Q  E Y+            P  FQVGD VLV        RH
Subjt:  PTGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRLQELEALDEKRLEA-QQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRH

Query:  TGNKFTPKWDGPYIV
              P+W GPY+V
Subjt:  TGNKFTPKWDGPYIV

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein4.3e-0743.21Show/hide
Query:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL
        ALI+GL+ A+E G   I+V GDSKL+  Q+  Q+ V HE L      A+ L  K  +  + HV R  N  AD  ANLA  L
Subjt:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0533.33Show/hide
Query:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL
        AL++GL+ AL+ G   + V GDS L+  Q+   +   H  +      A++LM  F    ++H+ R +N  AD  AN A  L
Subjt:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0533.33Show/hide
Query:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL
        AL++GL+ AL+ G   + V GDS L+  Q+   +   H  +      A++LM  F    ++H+ R +N  AD  AN A  L
Subjt:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAGATGAAAGATTTTGCTTTGAATTTATTCAATCTCGGAATTTCTGCCTTTATTTTATTCCATATCGGGCATATAATGCCTCGAGATACCTCTGGGCAATCAT
CTCTGGACGCTTAGCCAAATGGGCGGTTCTACTCCAACAATATGACATTGTCTATATTCCCCAAAAGGCAATAAAAGGACAAGCGCTAGCAGACTTTTTAGCAGACCACC
CAATTCCTTTGGATTGGAAGTTATGTGATGACCTACCAAACGATGAGGTTTTCTTCACAGAAGTTATGGAACCTTGGACTATGTACTTCGATGGTGCAGCTCGAAGAAGT
GGTGCGGGGGCAGGCATTGCTTTGATAATTGGCCTTCAAATAGCATTAGAAATCGGAGTGTCATTCATAGAGGTCTATGGTGATTCAAAATTGATAATCAATCAACTCTC
GCTTCAATATGACGTGAAACATGAAGACTTAAAGCCATATTTTGCTTATGCTCGACAATTGATGGAAAAGTTTGATAATGTGATGTTAGAACATGTCCCTAGAGTAGAAA
ATAAGAGAGCGGATGCATTGGCAAATTTAGCCACGGCCTTGACCATGCCAGATGATGTAACTCTGAACATACCACTTTGTCAACGATGGATTATACCCCCAGTTAGGCCT
GAATGTCAGGAAGTGAACATAGCAACATCCTATTTGATTGATGAAGAAGATTGGCGTCAACCCATCATAGAGTATCTAGAACATGGAAAGCTTCCAAAGGATTCTCGTCA
TAAAATTGAGATACGAAGAAGGGCAGCACACTTCATTTATTACAAGGGAACTTTATATCGCCGTTCTCTTGAAGGGCTCTTCCTTCGATGTCTCGGAAAGGAAGATTCGG
TAAAAGCTCTAAAGGAAGTACATGCAGGTGTTTGTGGAGCACATCAATCGGGACCAAAGCTTCAATTCCAGCTAAGAAGAATGGGCTACTACTGGCCTAAGATGATCCAA
GATTCAATAGACTATGTGAAGAAGTGTGAGCCTTGTCAATACCATGCAAACTTCATACACCAACCTCCAGAACCTCTTCATCCAACTGTGGCTTCTTGGCCTTTTGAGGC
TTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACATTCTTATATCCTAGCAGCAACAGACTATTTTTCAAGGTGGGCTGAGGCCATTTCCTTGA
GAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCTATCGATACGGTATTCCACATCGAATCGTGACGGATAATGGAAAGCAATTCTCCAATAGT
ATGATGGACAAGTTATGTGAAAAATTCAAATTCAAGCAATATAAGTCATCCATGTACAACGCAGCTGCGAATGGACTAGCAGAAGCATTCAACAAAACGTTGTGTAATCT
TTTAAAGAAAATTGTCTCCAAGTCAAAGAGGGATTGGCAAGAAAAGATCGGCGAGGCATTATGGGCTTATCGGACGACTCATCGCACCCCTACAGGGGTTACACCATATT
CGCTTGTTTACGGTGTGGAGGCTGTCCTTCCTCTCGAAAGGGAAAATCTGTCACTAAGAATGACAGTACAAGAGGGATTGACTACCGAAGATAATGTGAAGTTACGTCTT
CAAGAATTAGAAGCACTTGACGAAAAGCGATTAGAGGCTCAGCAAGCATTGGAATGTTATCAAGCGAGAATGTCCAAAGCTTTTGATAAACACGTTAAACCTCGCTCCTT
TCAAGTCGGTGATCTAGTACTTGTCGTAAGAAGACCGATCATCACAACAAGGCATACAGGAAATAAGTTCACACCTAAATGGGATGGACCCTACATTGTTAAAGAAGTTT
ATACAAATGGCGCATACAAGATCATTGATCAAGACAGACTACGAATTGGCCCAATCAATGGTAAATTTCTTAAAAAAATTTATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAGATGAAAGATTTTGCTTTGAATTTATTCAATCTCGGAATTTCTGCCTTTATTTTATTCCATATCGGGCATATAATGCCTCGAGATACCTCTGGGCAATCAT
CTCTGGACGCTTAGCCAAATGGGCGGTTCTACTCCAACAATATGACATTGTCTATATTCCCCAAAAGGCAATAAAAGGACAAGCGCTAGCAGACTTTTTAGCAGACCACC
CAATTCCTTTGGATTGGAAGTTATGTGATGACCTACCAAACGATGAGGTTTTCTTCACAGAAGTTATGGAACCTTGGACTATGTACTTCGATGGTGCAGCTCGAAGAAGT
GGTGCGGGGGCAGGCATTGCTTTGATAATTGGCCTTCAAATAGCATTAGAAATCGGAGTGTCATTCATAGAGGTCTATGGTGATTCAAAATTGATAATCAATCAACTCTC
GCTTCAATATGACGTGAAACATGAAGACTTAAAGCCATATTTTGCTTATGCTCGACAATTGATGGAAAAGTTTGATAATGTGATGTTAGAACATGTCCCTAGAGTAGAAA
ATAAGAGAGCGGATGCATTGGCAAATTTAGCCACGGCCTTGACCATGCCAGATGATGTAACTCTGAACATACCACTTTGTCAACGATGGATTATACCCCCAGTTAGGCCT
GAATGTCAGGAAGTGAACATAGCAACATCCTATTTGATTGATGAAGAAGATTGGCGTCAACCCATCATAGAGTATCTAGAACATGGAAAGCTTCCAAAGGATTCTCGTCA
TAAAATTGAGATACGAAGAAGGGCAGCACACTTCATTTATTACAAGGGAACTTTATATCGCCGTTCTCTTGAAGGGCTCTTCCTTCGATGTCTCGGAAAGGAAGATTCGG
TAAAAGCTCTAAAGGAAGTACATGCAGGTGTTTGTGGAGCACATCAATCGGGACCAAAGCTTCAATTCCAGCTAAGAAGAATGGGCTACTACTGGCCTAAGATGATCCAA
GATTCAATAGACTATGTGAAGAAGTGTGAGCCTTGTCAATACCATGCAAACTTCATACACCAACCTCCAGAACCTCTTCATCCAACTGTGGCTTCTTGGCCTTTTGAGGC
TTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACATTCTTATATCCTAGCAGCAACAGACTATTTTTCAAGGTGGGCTGAGGCCATTTCCTTGA
GAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCTATCGATACGGTATTCCACATCGAATCGTGACGGATAATGGAAAGCAATTCTCCAATAGT
ATGATGGACAAGTTATGTGAAAAATTCAAATTCAAGCAATATAAGTCATCCATGTACAACGCAGCTGCGAATGGACTAGCAGAAGCATTCAACAAAACGTTGTGTAATCT
TTTAAAGAAAATTGTCTCCAAGTCAAAGAGGGATTGGCAAGAAAAGATCGGCGAGGCATTATGGGCTTATCGGACGACTCATCGCACCCCTACAGGGGTTACACCATATT
CGCTTGTTTACGGTGTGGAGGCTGTCCTTCCTCTCGAAAGGGAAAATCTGTCACTAAGAATGACAGTACAAGAGGGATTGACTACCGAAGATAATGTGAAGTTACGTCTT
CAAGAATTAGAAGCACTTGACGAAAAGCGATTAGAGGCTCAGCAAGCATTGGAATGTTATCAAGCGAGAATGTCCAAAGCTTTTGATAAACACGTTAAACCTCGCTCCTT
TCAAGTCGGTGATCTAGTACTTGTCGTAAGAAGACCGATCATCACAACAAGGCATACAGGAAATAAGTTCACACCTAAATGGGATGGACCCTACATTGTTAAAGAAGTTT
ATACAAATGGCGCATACAAGATCATTGATCAAGACAGACTACGAATTGGCCCAATCAATGGTAAATTTCTTAAAAAAATTTATGCTTAA
Protein sequenceShow/hide protein sequence
MPRDERFCFEFIQSRNFCLYFIPYRAYNASRYLWAIISGRLAKWAVLLQQYDIVYIPQKAIKGQALADFLADHPIPLDWKLCDDLPNDEVFFTEVMEPWTMYFDGAARRS
GAGAGIALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRP
ECQEVNIATSYLIDEEDWRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQ
DSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS
MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEAVLPLERENLSLRMTVQEGLTTEDNVKLRL
QELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLVVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIIDQDRLRIGPINGKFLKKIYA