CuGenDBv2

Gene ID	CSPI04G12390
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	Chr4:10820667..10821053
RNA-Seq Expression	CSPI04G12390
Synteny	CSPI04G12390
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039535.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.9e-38

78.43

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        ARDE L  LK HLQHAQ Q KKFADVH RDVVFDI DWVYLK+Q YRQ+S+AK+RC+KLS KYFGP MV+GRVGEVAYLLDLPDTA+IHPVFHVSQ K+ 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CG
         G
Subjt:  CG

KAA0058899.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-37

74.53

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ ++KKFA++H RDVVFDI D VYLK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CGRQAP
         G + P
Subjt:  CGRQAP

TYK03080.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.7e-39

78.43

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        ARDE L  LK HLQHAQ Q+KKFADVH RDVVFDI DWVYLK+Q YRQ+S+AK+RC+KLS KYFGPYMV+GRVGEV YLLDLPDTA+IHPVFHVSQ K+ 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CG
         G
Subjt:  CG

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.6e-37

73.58

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ +++KFA++H RDVVFDI D VYLK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CGRQAP
         G + P
Subjt:  CGRQAP

TYK23724.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-37

74.53

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ ++KKFA++H RDVVFDI D VYLK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CGRQAP
         G + P
Subjt:  CGRQAP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UZE8 Ty3/gypsy retrotransposon protein

6.1e-38

74.53

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ ++KKFA++H RDVVFDI D VYLK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CGRQAP
         G + P
Subjt:  CGRQAP

A0A5D3BVC8 Ty3-gypsy retrotransposon protein

8.5e-40

78.43

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        ARDE L  LK HLQHAQ Q+KKFADVH RDVVFDI DWVYLK+Q YRQ+S+AK+RC+KLS KYFGPYMV+GRVGEV YLLDLPDTA+IHPVFHVSQ K+ 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CG
         G
Subjt:  CG

A0A5D3CVM7 Ty3-gypsy retrotransposon protein

9.3e-39

78.43

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        ARDE L  LK HLQHAQ Q KKFADVH RDVVFDI DWVYLK+Q YRQ+S+AK+RC+KLS KYFGP MV+GRVGEVAYLLDLPDTA+IHPVFHVSQ K+ 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CG
         G
Subjt:  CG

A0A5D3DFB4 Transposon Ty3-G Gag-Pol polyprotein

1.8e-37

76.47

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ ++KKFA+VH RDVVFDI D V+LK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CG
         G
Subjt:  CG

A0A5D3DJA9 Ty3/gypsy retrotransposon protein

6.1e-38

74.53

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Query:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG
        +RDE+L  LK HLQHAQ ++KKFA++H RDVVFDI D VYLK+Q YRQQS+AKKRCEKLS +YFGPY VLGRVGEVAYLLDLP+TA+IHPVFHVSQ KK 
Subjt:  ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKG

Query:  CGRQAP
         G + P
Subjt:  CGRQAP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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GCCAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTACAACACGCCCAAGCACAAATCAAGAAATTTGCGGATGTACACCATCGAGATGTGGTGTTCGACATTAGTGA
TTGGGTCTATTTAAAAATACAGTCGTATAGACAGCAGTCGTTGGCTAAAAAACGATGCGAAAAGCTGTCATCAAAATATTTTGGACCCTACATGGTATTAGGGAGGGTAG
GGGAAGTGGCCTATCTACTAGATCTACCAGACACTGCTCGAATCCACCCCGTGTTCCACGTGTCACAACAAAAAAAAGGCTGTGGGAGACAAGCACCATGTGCAACTAGA
CATCTCCTTACTCAACGACCAAATGGAATTAGTCCTCGAGCCCGAAAATGTGACTGA

mRNA sequence

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Protein sequence

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ARDELLITLKHHLQHAQAQIKKFADVHHRDVVFDISDWVYLKIQSYRQQSLAKKRCEKLSSKYFGPYMVLGRVGEVAYLLDLPDTARIHPVFHVSQQKKGCGRQAPCATR
HLLTQRPNGISPRARKCD

CSPI04G12390 (gene) of Cucumber (PI 183967) v1 genome