; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G12480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNusB domain-containing protein
Genome locationChr4:10902081..10914033
RNA-Seq ExpressionCSPI04G12480
SyntenyCSPI04G12480
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0031564 - transcription antitermination (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR006027 - NusB/RsmB/TIM44
IPR011605 - NusB antitermination factor
IPR035926 - NusB-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040119.1 NusB/RsmB/TIM44 [Cucumis melo var. makuwa]3.5e-18170.48Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK
        MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHK
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK

Query:  TRLFTVGDKVITTR--------------------------------------------------------------------------------------
        TRLF VGDKVITTR                                                                                      
Subjt:  TRLFTVGDKVITTR--------------------------------------------------------------------------------------

Query:  -----------------------PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
                               PNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSP
Subjt:  -----------------------PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP

Query:  RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTR
        RAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTR
Subjt:  RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTR

Query:  KLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        KLLVAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  KLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

TYK21741.1 NusB/RsmB/TIM44 [Cucumis melo var. makuwa]1.2e-17389.2Show/hide
Query:  LCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIV
        +  P +  FSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHKTRLFTVGDKVITTRPNFHFS HISGICQFPFHASSIV
Subjt:  LCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIV

Query:  PHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLME
        PH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLME
Subjt:  PHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLME

Query:  YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI
        YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEI
Subjt:  YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI

Query:  TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

XP_004149639.3 uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus]1.1e-214100Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI
        MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI

Query:  TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD
        TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD
Subjt:  TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD

Query:  PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
        PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Subjt:  PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV

Query:  IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
Subjt:  IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

XP_008449897.1 PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]4.3e-19590.23Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK
        MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHK
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK

Query:  TRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALS
        TRLF VGDKVITTRPNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSPRAARELALS
Subjt:  TRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALS

Query:  IVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG
        IVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DG
Subjt:  IVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG

Query:  WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        WD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

XP_038901769.1 uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]3.4e-16881.93Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPK----SHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQP-----------HSLKFAPGA
        MSLAPP S Y YSSHSHPLPK    SHLSS TQ SH   F      H SFSTS STLHSLK    KT  GLGD  DADQP             L FAPGA
Subjt:  MSLAPPTSLYPYSSHSHPLPK----SHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQP-----------HSLKFAPGA

Query:  SAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARE
        SA  T LFTVGDKVITTRPNFHFS HISGIC+FPF ASSIVPH+KDSM   C QASLRASTSF EN VAE+RSSIS+SS+E IPKVDKSGKFCSPRAARE
Subjt:  SAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARE

Query:  LALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVA
        LALSIVYAACLEGSDPVRLFEKRLN RRE GYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVA
Subjt:  LALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVA

Query:  VGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        V DGWDSR LKIEKVIPPTWK+KPA RILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  AREK
Subjt:  VGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

TrEMBL top hitse value%identityAlignment
A0A0A0KWZ5 NusB domain-containing protein5.3e-215100Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI
        MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVI

Query:  TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD
        TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD
Subjt:  TTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSD

Query:  PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
        PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV
Subjt:  PVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKV

Query:  IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
Subjt:  IPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X12.1e-19590.23Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK
        MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHK
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK

Query:  TRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALS
        TRLF VGDKVITTRPNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSPRAARELALS
Subjt:  TRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALS

Query:  IVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG
        IVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DG
Subjt:  IVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDG

Query:  WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        WD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  WDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

A0A1S4DXQ5 uncharacterized protein LOC103491638 isoform X26.8e-14694.91Show/hide
Query:  PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVR
        PNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVR
Subjt:  PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVR

Query:  LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPP
        LFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DGWD+RALKIEKVIPP
Subjt:  LFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPP

Query:  TWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        TWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  TWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

A0A5A7TFT7 NusB/RsmB/TIM441.7e-18170.48Show/hide
Query:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK
        MSLAPPTSLY YSSHSHPLPKSHLSSFTQRSHPN F + F FHLSFSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHK
Subjt:  MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHK

Query:  TRLFTVGDKVITTR--------------------------------------------------------------------------------------
        TRLF VGDKVITTR                                                                                      
Subjt:  TRLFTVGDKVITTR--------------------------------------------------------------------------------------

Query:  -----------------------PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP
                               PNFHFS HISGICQFPFHASSIVPH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSP
Subjt:  -----------------------PNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSP

Query:  RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTR
        RAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTR
Subjt:  RAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTR

Query:  KLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        KLLVAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  KLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

A0A5D3DDJ4 NusB/RsmB/TIM445.9e-17489.2Show/hide
Query:  LCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIV
        +  P +  FSTSFSTLHS K SAFK D GLGDSHDA           +QPH LKFAPGASAHKTRLFTVGDKVITTRPNFHFS HISGICQFPFHASSIV
Subjt:  LCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDA-----------DQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGICQFPFHASSIV

Query:  PHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLME
        PH+K+SMPR CCQASLRASTSF ENRVAEERSSIS+SSIE IPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLME
Subjt:  PHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLME

Query:  YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI
        YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPK+VYSKLILRFTRKLLVAV DGWD+RALKIEKVIPPTWKNKPAGRILELCILHLAMSEI
Subjt:  YNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEI

Query:  TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK
        TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKE DS PAREK
Subjt:  TVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK

SwissProt top hitse value%identityAlignment
A7GWZ7 Transcription antitermination protein NusB3.0e-0538.81Show/hide
Query:  KIEKVIPPTWKNKPAGR--ILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        ++++++ P  K K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  KIEKVIPPTWKNKPAGR--ILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB5.0e-0543.75Show/hide
Query:  WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK
        W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   IK
Subjt:  WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIK

B1XIZ3 Transcription antitermination protein NusB8.6e-0541.67Show/hide
Query:  LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSM
        L+  IL +A++EI  + T +++ INEAV+LAKR+ D    R ING LR     ++  DS+
Subjt:  LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSM

Q18B61 Transcription antitermination protein NusB2.7e-0639.19Show/hide
Query:  KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I
Subjt:  KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q8GIR7 Transcription antitermination protein NusB1.9e-0452.08Show/hide
Query:  LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hitse value%identityAlignment
AT4G26370.1 antitermination NusB domain-containing protein5.4e-8771.36Show/hide
Query:  SENRVAEERSSISISSIEMI--PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEAD
        S  R A    +IS   ++ +  PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE D
Subjt:  SENRVAEERSSISISSIEMI--PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEAD

Query:  ELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR
        EL+R DE++S IEAE+L+APPK+VYSKL+LRF +KLL AV D WDS  + IEK+ PP WK+ PAGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKR
Subjt:  ELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR

Query:  FCDGAAPRIINGCLRTFVKD
        FCDG+APRIINGCLRTFVKD
Subjt:  FCDGAAPRIINGCLRTFVKD

AT4G26370.2 antitermination NusB domain-containing protein7.4e-3664.1Show/hide
Query:  SENRVAEERSSISISSIEMI--PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEAD
        S  R A    +IS   ++ +  PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EYNHMSFGGPPV  ET EE D
Subjt:  SENRVAEERSSISISSIEMI--PKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEAD

Query:  ELLRKDERDSTIEAEIL
        EL+R DE++S I   ++
Subjt:  ELLRKDERDSTIEAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCAACTTCTTTTC
CTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCCCATGATGCTG
ACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCATTTCTCCTAC
CACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGGCTTCTACTTC
TTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCGAGAGCTGCTA
GAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGAC
AAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTAC
AATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTG
CACTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAACGGTTATTGGA
ACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACAT
CAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
TCCGAGACGGCTTACGCACCACCAAACAAGTGGGAGGAGCTTCCTTCTTCTTCCACTAGGAAATGGCTCTGCCTCCAAGTCCTCTGTGAGTAACGAGAGCTGATTTTGGG
GCATTTCACAATGTCTTTAGCTCCACCCACCTCCCTTTATCCCTATTCTTCCCACTCTCATCCCCTCCCCAAATCCCATTTATCTTCCTTTACTCAACGTTCCCATCCCA
ACTTCTTTTCCTTATGCTTTCCCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCACTCCCTTAAATACTCAGCTTTCAAAACCGACACTGGACTCGGAGATTCC
CATGATGCTGACCAACCTCATAGTTTGAAATTTGCACCTGGAGCTTCTGCCCACAAGACTCGACTCTTCACCGTTGGGGATAAAGTTATCACTACCAGGCCTAATTTTCA
TTTCTCCTACCACATTTCTGGAATATGTCAGTTCCCATTTCATGCTAGTTCAATTGTTCCCCACATAAAAGATTCCATGCCACGTTTCTGCTGTCAAGCCTCGCTTCGGG
CTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGGTTGACAAGAGCGGCAAATTTTGTAGTCCG
AGAGCTGCTAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTTTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATA
TGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCGGTTACCGTTGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAA
GGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGG
GACAGTCGTGCACTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCCATGTCTGAAATAAC
GGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTG
TAAAGGACATCAAAGAGATTGATTCAATGCCTGCTCGAGAGAAGTAAGAAGTCCGTGCATGACCCTGAACTTTTGGGGTGCCTCAGAACCTTTGTAAGGATATCGAAGAA
TTTGACTCAACTCATGCTGTGGTGCAAAATCACTTTCAAACATGCTCGGAACTTGTTACTGTCAACAGCAGCCAAAGTGAAGTGATTTGAAGAATCCCTTGTGCTTGCCG
CAATCCTCAGTTAGAATTTCTCTCCCGTTCTCCATGTTGCGGTGGATTTCTGTTATATCTGATTATCCATAGAGTTGAGTAATGGAGGTGCATGAGTGTGAGAGAATGAG
TAGTCAGATTTACCCAGTACTGGGCGACATGTTATTATATGCACAATATTATCAGTGTATGAAGTTTTGATAAAGGTGTGATGTCTCGTTTGTCCCGTTCGTACCAACCT
CTGTTTATCATGTTTTCATTATGTGTATTTTACTTTGCATTTATTTTTGTGTGATTCCTCACTACTTTGCATGTGGCTCAAAACGTATTATGGGG
Protein sequenceShow/hide protein sequence
MSLAPPTSLYPYSSHSHPLPKSHLSSFTQRSHPNFFSLCFPFHLSFSTSFSTLHSLKYSAFKTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSY
HISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFD
KTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIG
TRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK