; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G12500 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G12500
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationChr4:10916688..10919325
RNA-Seq ExpressionCSPI04G12500
SyntenyCSPI04G12500
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21740.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]1.1e-6398.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]7.6e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_008449895.1 PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]8.4e-6498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.3e-6194.93Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED+A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAE+EL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.2e-6296.38Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+A IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAEKEL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 213.7e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A1S3BN38 Mediator of RNA polymerase II transcription subunit 214.1e-6498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 214.1e-6498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A5D3DEB7 Mediator of RNA polymerase II transcription subunit 215.3e-6498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 214.2e-6194.93Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTED+A IAEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAEKEL QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 211.7e-5179.14Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Q7ZTI5 Mediator of RNA polymerase II transcription subunit 212.7e-0426.62Show/hide
Query:  DIISQLQEQVNTIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ
        D ++QLQ+ VN++A    N  G LQ+ APP     ++ + N  +P    PTE+ A      +L +A + + AK  D L+ +LP  +     Q   + +L+
Subjt:  DIISQLQEQVNTIAALAFNTFGTLQRDAPP-----VRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQ

Query:  AENDVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLK
         EN      L++ +   +  L ++Q   + +A + L  +
Subjt:  AENDVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLK
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 211.2e-5279.14Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D+AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAA
TTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCAT
TGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTA
CAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
CTGAAACACCAATTAATTATTATATGTGAAAATTATTGAAAATAGTTAGAAATACATCTCAATAATACTTTAATTCATTCTGCTATTTTCGAAACATTTTGTGATTGACG
ACTTGACGTTCTAAAACTAGAAAATTAGGAAGGTATAAGGAAAAGAAGGAACCCTAATTCATCTGCTTTTTCTCCGACTCACGTTCAACCGCCCAGCCCCTTCCTTGTCT
CCGGTAGCATCTCGATGACAGTCCTTTGAGATAAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAACTGATTTGCTGATTAAAAGGAGCGATATGTGTATTATTT
GCGGAATCATCTTCTGAACAATTCATCCTAGGGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATT
TGGGACATTGCAAAGAGATGCTCCTCCAGTTCGTTTATCCCCTAATTATCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAATGCAACCATCGCAGAGCAGCCCAAGC
TTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTA
CAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAACAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCTT
GAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAATTTTCCTATGCTACCAATGTATGGAAATTTTCCGTATCTCCCCGTTCATTTCTGCCGCATGACTTTTTATTTTTA
TATTACATATATGTAGAAATATACGTGAATCTACAGTTTATGGAATAAAAATACTTTTATCCATTGTATTAATTTTTTTTATGACGGATTGATATTTTCATCAATATTTC
TACGTTTTCAAAACGGTTTTGATATTAATATGAGGAGTGAATGGATATTTTCTGTTAGATT
Protein sequenceShow/hide protein sequence
MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQL
QAAEKELVQVQELFSQVADNCLNLKKAD