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CSPI04G13750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G13750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60s ribosomal protein L18
Genome locationChr4:11686321..11686599
RNA-Seq ExpressionCSPI04G13750
SyntenyCSPI04G13750
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041394.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa]1.8e-2275.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL
        M+GKES++S +VG +ADEIRICEVPALKALRLTQTARSRIEKAGWECL+FDQLA RAHLGQNT L   LR PK  +  L
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL

PON35675.1 Ribosomal protein [Trema orientale]1.4e-1755.56Show/hide
Query:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTP-----KRHESILVQHLVCYTAIPSHM
        +GKE K++ +VG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECL+FDQLALRA LGQNT  +E+L         +   +++QHLVC+TA P+ M
Subjt:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTP-----KRHESILVQHLVCYTAIPSHM

PON65874.1 Ribosomal protein [Parasponia andersonii]1.4e-1756.44Show/hide
Query:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEV-------LRTPKRHESILVQHLVCYTAIPSH
        +GKE K++ +VG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECL+FDQLALRA LGQNT  +E+       L +PK    +++QHLVC+TA P+ 
Subjt:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEV-------LRTPKRHESILVQHLVCYTAIPSH

Query:  M
        M
Subjt:  M

RYR52134.1 hypothetical protein Ahy_A06g027051 [Arachis hypogaea]1.4e-1752.14Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNT------------------------FLLEVLRTPKR
        M+GKE K++ +VG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECL+FDQLALRA LGQNT                        F LE LR P R
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNT------------------------FLLEVLRTPKR

Query:  HESILVQHLVCYTAIPS
          S L QHLVC    PS
Subjt:  HESILVQHLVCYTAIPS

TYJ96153.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa]1.8e-2275.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL
        M+GKES++S +VG +ADEIRICEVPALKALRLTQTARSRIEKAGWECL+FDQLA RAHLGQNT L   LR PK  +  L
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL

TrEMBL top hitse value%identityAlignment
A0A0A0L0N3 Ribosomal_L18e/L15P domain-containing protein1.5e-43100Show/hide
Query:  MEGKESKVSIVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESILVQHLVCYTAIPSHM
        MEGKESKVSIVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESILVQHLVCYTAIPSHM
Subjt:  MEGKESKVSIVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESILVQHLVCYTAIPSHM

A0A2P5CXV4 Ribosomal protein6.6e-1856.44Show/hide
Query:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEV-------LRTPKRHESILVQHLVCYTAIPSH
        +GKE K++ +VG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECL+FDQLALRA LGQNT  +E+       L +PK    +++QHLVC+TA P+ 
Subjt:  EGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEV-------LRTPKRHESILVQHLVCYTAIPSH

Query:  M
        M
Subjt:  M

A0A445CMH8 Ribosomal_L18e/L15P domain-containing protein6.6e-1852.14Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNT------------------------FLLEVLRTPKR
        M+GKE K++ +VG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECL+FDQLALRA LGQNT                        F LE LR P R
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNT------------------------FLLEVLRTPKR

Query:  HESILVQHLVCYTAIPS
          S L QHLVC    PS
Subjt:  HESILVQHLVCYTAIPS

A0A5A7TD77 60S ribosomal protein L18-28.8e-2375.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL
        M+GKES++S +VG +ADEIRICEVPALKALRLTQTARSRIEKAGWECL+FDQLA RAHLGQNT L   LR PK  +  L
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL

A0A5D3BA35 60S ribosomal protein L18-28.8e-2375.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL
        M+GKES++S +VG +ADEIRICEVPALKALRLTQTARSRIEKAGWECL+FDQLA RAHLGQNT L   LR PK  +  L
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESIL

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-11.7e-1053.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK
        M+GK+ K++ IVG + D++RI +VPAL   ALR T++AR+RI KAG ECL+FDQLAL      +NT L   LR PK
Subjt:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK

O65729 60S ribosomal protein L18 (Fragment)8.8e-1252Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        M+GKE K+  +VG + D+IR+ +VP +K  AL+ T+TAR+RI+KAG ECL+FDQLALR  L        +LR PK
Subjt:  MEGKESKVS-IVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK

P42791 60S ribosomal protein L18-21.0e-1562.67Show/hide
Query:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        M GKE K+++ VG I D++R+ E+PA+K  ALR T+ AR+RIEKAG ECL+FDQLALRA LGQNT L   LR PK
Subjt:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK

Q940B0 60S ribosomal protein L18-32.2e-1561.33Show/hide
Query:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        M GK+ K+++ VG I D++R+ E+PA+K  ALR T+ AR+RIEKAG ECL+FDQLALRA LGQNT L   LR PK
Subjt:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK

Q9VS34 60S ribosomal protein L181.3e-1052.86Show/hide
Query:  ESKVSIVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        ES + +VG + D+ R+  VP L   AL +TQTAR RI KAG E L+FDQLALR+  G+NT LL+  RT +
Subjt:  ESKVSIVGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein1.2e-1153.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK
        M+GK+ K++ IVG + D++RI +VPAL   ALR T++AR+RI KAG ECL+FDQLAL      +NT L   LR PK
Subjt:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein1.2e-1153.95Show/hide
Query:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK
        M+GK+ K++ IVG + D++RI +VPAL   ALR T++AR+RI KAG ECL+FDQLAL      +NT L   LR PK
Subjt:  MEGKESKVS-IVGKIADEIRICEVPAL--KALRLTQTARSRIEKAGWECLSFDQLALRAHL-GQNTFLLEVLRTPK

AT3G05590.1 ribosomal protein L187.2e-1762.67Show/hide
Query:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        M GKE K+++ VG I D++R+ E+PA+K  ALR T+ AR+RIEKAG ECL+FDQLALRA LGQNT L   LR PK
Subjt:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein1.6e-1661.33Show/hide
Query:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK
        M GK+ K+++ VG I D++R+ E+PA+K  ALR T+ AR+RIEKAG ECL+FDQLALRA LGQNT L   LR PK
Subjt:  MEGKESKVSI-VGKIADEIRICEVPALK--ALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAGGAAAGTAAGGTTTCTATTGTTGGGAAAATTGCCGATGAAATTCGCATCTGTGAAGTTCCAGCATTGAAAGCTCTGAGGCTTACTCAGACAGCAAGGTC
AAGGATCGAAAAGGCTGGCTGGGAATGTTTGTCATTTGACCAGCTTGCTTTGAGGGCTCATCTGGGTCAGAACACGTTCCTCTTAGAGGTCCTAAGAACTCCCAAGAGGC
ATGAAAGCATTTTGGTCCAGCACCTGGTGTGTTACACAGCCATTCCTAGCCATATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAGGAAAGTAAGGTTTCTATTGTTGGGAAAATTGCCGATGAAATTCGCATCTGTGAAGTTCCAGCATTGAAAGCTCTGAGGCTTACTCAGACAGCAAGGTC
AAGGATCGAAAAGGCTGGCTGGGAATGTTTGTCATTTGACCAGCTTGCTTTGAGGGCTCATCTGGGTCAGAACACGTTCCTCTTAGAGGTCCTAAGAACTCCCAAGAGGC
ATGAAAGCATTTTGGTCCAGCACCTGGTGTGTTACACAGCCATTCCTAGCCATATGTGA
Protein sequenceShow/hide protein sequence
MEGKESKVSIVGKIADEIRICEVPALKALRLTQTARSRIEKAGWECLSFDQLALRAHLGQNTFLLEVLRTPKRHESILVQHLVCYTAIPSHM