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CSPI04G14510 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G14510
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE2
Genome locationChr4:12195376..12196052
RNA-Seq ExpressionCSPI04G14510
SyntenyCSPI04G14510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051133.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.4e-1844.37Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK   VA SSTESEYR L L A+E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ
                 D VL+  L+V YV S +QLAD LTKSLTHSQFQ
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ

KAA0057477.1 Copia protein [Cucumis melo var. makuwa]5.1e-1641.84Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                 D VL   L+V Y+ S DQLAD LTK LTHS F
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

TYJ96769.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.3e-1945.07Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK  VVA SSTESEYR L L A+E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ
                 D VL+  L+V YV S +QLAD LTKSLTHSQFQ
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ

TYK30173.1 Copia protein [Cucumis melo var. makuwa]5.1e-1641.84Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                 D VL   L+V Y+ S DQLAD LTK LTHS F
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

XP_022154602.1 uncharacterized protein LOC111021822 [Momordica charantia]1.0e-1639.39Show/hide
Query:  VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------
        V+  L  TK + +H+         +YS+ DWASN+DDRKS+ AYCVF G  L+SWSSKKQ  VA SSTES YR LA  + E                   
Subjt:  VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------

Query:  ---------------------------------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                                         DHVL+  L+V YV S DQLAD LTK L HSQF
Subjt:  ---------------------------------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

TrEMBL top hitse value%identityAlignment
A0A5A7U5H7 Putative mitochondrial protein1.2e-1844.37Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK   VA SSTESEYR L L A+E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ
                 D VL+  L+V YV S +QLAD LTKSLTHSQFQ
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ

A0A5A7US38 Copia protein2.4e-1641.84Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                 D VL   L+V Y+ S DQLAD LTK LTHS F
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

A0A5D3BCJ6 Putative mitochondrial protein4.0e-1945.07Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK  VVA SSTESEYR L L A+E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ
                 D VL+  L+V YV S +QLAD LTKSLTHSQFQ
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQ

A0A5D3E251 Copia protein2.4e-1641.84Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------
        ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E                                           
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------------------------------

Query:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                 D VL   L+V Y+ S DQLAD LTK LTHS F
Subjt:  ---------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

A0A6J1DM39 uncharacterized protein LOC1110218224.9e-1739.39Show/hide
Query:  VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------
        V+  L  TK + +H+         +YS+ DWASN+DDRKS+ AYCVF G  L+SWSSKKQ  VA SSTES YR LA  + E                   
Subjt:  VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE-------------------

Query:  ---------------------------------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF
                                         DHVL+  L+V YV S DQLAD LTK L HSQF
Subjt:  ---------------------------------DHVLQENLDVLYVRSMDQLADRLTKSLTHSQF

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.6e-0744.83Show/hide
Query:  LSYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        + YS+ DWA +V+ R+S   Y   + G  +SW SKKQ  VA SSTE EY  L+    E
Subjt:  LSYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-0442.86Show/hide
Query:  YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        Y++ D A ++D+RKS   Y     G  +SW SK Q  VA S+TE+EY    + ATE
Subjt:  YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

P92519 Uncharacterized mitochondrial protein AtMg008101.6e-0947.37Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        ++ + DWA     R+S   +C F+G N++SWS+K+Q  V+ SSTE+EYR LAL A E
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-0849.12Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        +YS+ DWA + DD  S   Y V++G + +SWSSKKQ  V  SSTE+EYR++A  ++E
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.2e-0949.12Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        +YS+ DWA + DD  S   Y V++G + +SWSSKKQ  V  SSTE+EYR++A  ++E
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.4e-0946.43Show/hide
Query:  YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        +S+  + S  D R+S   YC+F+G +L+SW SKKQ VV+ SS E+EYR L+    E
Subjt:  YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE

ATMG00810.1 DNA/RNA polymerases superfamily protein1.2e-1047.37Show/hide
Query:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE
        ++ + DWA     R+S   +C F+G N++SWS+K+Q  V+ SSTE+EYR LAL A E
Subjt:  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATATATAGGCTTGTTCCAACAAAGTTCTTATTTATCCATCTCTCCTATTCTAATGTCGATTGGGCATCAAATGTTGATGATAGAAAATCAGTTTATGCTTATTG
TGTTTTCATTGGTGGAAATTTGATGTCTTGGTCCTCTAAGAAACAGCACGTAGTTGCTCACTCAAGCACCGAGTCTGAGTATCGTACCCTTGCCCTTGTTGCAACTGAAG
ATCATGTTCTTCAAGAAAATCTGGATGTTCTTTATGTCCGTTCTATGGATCAATTGGCAGATCGTTTAACAAAGTCCCTCACCCACTCTCAATTTCAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATATATAGGCTTGTTCCAACAAAGTTCTTATTTATCCATCTCTCCTATTCTAATGTCGATTGGGCATCAAATGTTGATGATAGAAAATCAGTTTATGCTTATTG
TGTTTTCATTGGTGGAAATTTGATGTCTTGGTCCTCTAAGAAACAGCACGTAGTTGCTCACTCAAGCACCGAGTCTGAGTATCGTACCCTTGCCCTTGTTGCAACTGAAG
ATCATGTTCTTCAAGAAAATCTGGATGTTCTTTATGTCCGTTCTATGGATCAATTGGCAGATCGTTTAACAAAGTCCCTCACCCACTCTCAATTTCAAAACTGA
Protein sequenceShow/hide protein sequence
MVIYRLVPTKFLFIHLSYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATEDHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQN