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CSPI04G15480 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G15480
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationChr4:12855920..12858511
RNA-Seq ExpressionCSPI04G15480
SyntenyCSPI04G15480
Gene Ontology termsGO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]8.1e-4869.86Show/hide
Query:  VITTVTEVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDC
        VI  +T  +    PSS  + ++   +S++ H            +L+ E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDC
Subjt:  VITTVTEVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDC

Query:  CGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        C HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI S K
Subjt:  CGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]4.7e-7298.57Show/hide
Query:  EVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKL
        +VHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKL
Subjt:  EVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKL

Query:  PFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        PFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Subjt:  PFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

XP_004147903.1 signal recognition particle 19 kDa protein [Cucumis sativus]5.3e-4798.94Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

XP_022138272.1 signal recognition particle 19 kDa protein [Momordica charantia]9.9e-4695.74Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]7.6e-4696.81Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

TrEMBL top hitse value%identityAlignment
A0A0A0L2H8 Uncharacterized protein5.8e-60100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLF
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLF
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLF

Query:  GPFSSLGKKTSIYN
        GPFSSLGKKTSIYN
Subjt:  GPFSSLGKKTSIYN

A0A0A0L5F9 Uncharacterized protein2.5e-4793.94Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITS K
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

A0A1S3AYC2 signal recognition particle 19 kDa protein1.8e-4595.74Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

A0A6J1CAM2 signal recognition particle 19 kDa protein4.8e-4695.74Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

A0A6J1IY39 signal recognition particle 19 kDa protein1.8e-4595.74Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI S K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein1.3e-1651.11Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     RD   RGRVRV LK+EDG+L      S K+
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA

P49964 Signal recognition particle 19 kDa protein2.9e-3269.32Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTCVEI DCC HLK+P AIE+DKAYPRDF Q GRVRV LKK+DG+  NPAI + K
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

Q3ZBG7 Signal recognition particle 19 kDa protein1.0e-1651.11Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     RD   RGRVRV LK+EDG+L      S K+
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA

Q5RBR1 Signal recognition particle 19 kDa protein1.3e-1651.11Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     RD   RGRVRV LK+EDG+L      S K+
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSSKA

Q943Z6 Signal recognition particle 19 kDa protein9.3e-3977.66Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative6.6e-4077.66Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITS K
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGGCTACCCCATTTGAATCATCTTTTCATCTTTGCCTTTTCTAATTCTCTCGGCATATTTTTTCCGTGGTTTGATTCCAACCCTCCATGTGACGAGTGCTTGGA
ACAAACTAAATTATATCTAAAGTTTGGCAGCATCTCCTCTCAAATATGGACAAGTGATATTTGTTTTGATCACGTTATTACAACAGTTACTGAGGTTCACGGTTCAACCC
CACCTTCATCTTACTCTTCCAAGTCTTCCATCTCCGTCGTCTCGTCTGTCCGACATCCGGTTTCAGTCTCTCTGATCGTCACGGTTTCAGCTGTTCTTCATTCTGAATTT
GGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACGATTGCTGAAGGAAGACGTATAGGTGTTAG
CAAAGCATGCGAGAATCCTACGTGTGTTGAGATCGGGGATTGCTGCGGTCATCTCAAACTTCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAA
GAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTAGTTGTCTCTTTGGACCCTTTTCATCCCTTGGA
AAAAAGACTTCTATTTATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGGCTACCCCATTTGAATCATCTTTTCATCTTTGCCTTTTCTAATTCTCTCGGCATATTTTTTCCGTGGTTTGATTCCAACCCTCCATGTGACGAGTGCTTGGA
ACAAACTAAATTATATCTAAAGTTTGGCAGCATCTCCTCTCAAATATGGACAAGTGATATTTGTTTTGATCACGTTATTACAACAGTTACTGAGGTTCACGGTTCAACCC
CACCTTCATCTTACTCTTCCAAGTCTTCCATCTCCGTCGTCTCGTCTGTCCGACATCCGGTTTCAGTCTCTCTGATCGTCACGGTTTCAGCTGTTCTTCATTCTGAATTT
GGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACGATTGCTGAAGGAAGACGTATAGGTGTTAG
CAAAGCATGCGAGAATCCTACGTGTGTTGAGATCGGGGATTGCTGCGGTCATCTCAAACTTCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAA
GAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTAGTTGTCTCTTTGGACCCTTTTCATCCCTTGGA
AAAAAGACTTCTATTTATAACTGA
Protein sequenceShow/hide protein sequence
MSGLPHLNHLFIFAFSNSLGIFFPWFDSNPPCDECLEQTKLYLKFGSISSQIWTSDICFDHVITTVTEVHGSTPPSSYSSKSSISVVSSVRHPVSVSLIVTVSAVLHSEF
GWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSSKASSCLFGPFSSLG
KKTSIYN