CuGenDBv2

Gene ID	CSPI04G16090
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	kinetochore protein SPC24 homolog
Genome location	Chr4:13424942..13425388
RNA-Seq Expression	CSPI04G16090
Synteny	CSPI04G16090
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	IPR044951 - Kinetochore protein SPC24-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037730.1 uncharacterized protein E6C27_scaffold141G00230 [Cucumis melo var. makuwa]

1.3e-48

96.26

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_004148609.1 kinetochore protein SPC24 homolog [Cucumis sativus]

3.1e-50

100

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_008464222.1 PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]

1.3e-48

96.26

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_022978290.1 uncharacterized protein LOC111478320 [Cucurbita maxima]

1.3e-35

74.77

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_038883770.1 kinetochore protein SPC24 homolog [Benincasa hispida]

8.6e-40

80.37

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDF + SNIE   SFADDLVA+LKDP DV++LNQCLEHFK LQSSCDDDF+SVQS ++DYEKKIKAC++KTEEAKANTV DDEM ILEKEL+EE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L002 Uncharacterized protein

1.5e-50

100

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A1S3CKZ4 uncharacterized protein LOC103502153

6.4e-49

96.26

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A5D3CGK0 Uncharacterized protein

6.4e-49

96.26

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+EDYEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A6J1GFS1 uncharacterized protein LOC111453528

5.2e-35

72.9

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEEL S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A6J1IPN8 uncharacterized protein LOC111478320

6.2e-36

74.77

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++DYEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

3.1e-16

41.12

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
         L +E+R
Subjt:  LLMEEIR

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

2.2e-17

41.12

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Query:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH
        MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGH

Query:  LLMEEIR
         L +E+R
Subjt:  LLMEEIR

AT5G01570.1 unknown protein

5.0e-14

39.39

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Query:  NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR
        N E + S+ D+L+ +L D      L Q LE  + +  SCD+DF  +  SL+D +KK+  C+EKT+EA +    ++E+E L+KEL+EE+     L EE+R
Subjt:  NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR

Sequences

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CDS sequence

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ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCT
TGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAG
AGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTCATGGAGGAGATAAGATAA

mRNA sequence

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Protein sequence

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MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIR

CSPI04G16090 (gene) of Cucumber (PI 183967) v1 genome