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CSPI04G16100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionkinetochore protein SPC24 homolog
Genome locationChr4:13425463..13426753
RNA-Seq ExpressionCSPI04G16100
SyntenyCSPI04G16100
Gene Ontology termsGO:0051983 - regulation of chromosome segregation (biological process)
InterPro domainsIPR044951 - Kinetochore protein SPC24-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603567.1 Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. sororia]6.2e-4082.35Show/hide
Query:  MHLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
        MHL+F NT++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMIN
Subjt:  MHLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

Query:  SP
        SP
Subjt:  SP

XP_004148609.1 kinetochore protein SPC24 homolog [Cucumis sativus]1.4e-44100Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

XP_008464222.1 PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]6.6e-4295.74Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVTNEINELE +RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEFDP KISSFDTCNGLWNMINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

XP_022144075.1 uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]8.4e-3785.11Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVT+EINEL+C+R+SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE DP K S+FD CN +W+MINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

XP_038883770.1 kinetochore protein SPC24 homolog [Benincasa hispida]1.2e-3887.23Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVTNEINELE +R+S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDR+KR+VQ+FEFD  KISSFD CNG+WNMINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

TrEMBL top hitse value%identityAlignment
A0A0A0KXM7 Uncharacterized protein6.0e-4999.02Show/hide
Query:  MHLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
        M LVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
Subjt:  MHLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

Query:  SP
        SP
Subjt:  SP

A0A1S3CKZ4 uncharacterized protein LOC1035021533.2e-4295.74Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVTNEINELE +RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEFDP KISSFDTCNGLWNMINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

A0A6J1CQL9 uncharacterized protein LOC111013852 isoform X24.1e-3785.11Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVT+EINEL+C+R+SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE DP K S+FD CN +W+MINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X14.1e-3785.11Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        LVT+EINEL+C+R+SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE DP K S+FD CN +W+MINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

A0A6J1IPN8 uncharacterized protein LOC1114783202.0e-3682.98Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP
        ++T+EIN+L+ +R+SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP  ISSFD CNG+WNMINSP
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP

SwissProt top hitse value%identityAlignment
Q67XT3 Kinetochore protein SPC24 homolog1.1e-2046.74Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
        LV +E+ +L  +  S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F+  K+++++TCN +W++IN
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

Arabidopsis top hitse value%identityAlignment
AT3G08880.1 unknown protein8.1e-2246.74Show/hide
Query:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN
        LV +E+ +L  +  S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F+  K+++++TCN +W++IN
Subjt:  LVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMIN

AT5G01570.1 unknown protein4.5e-1243.02Show/hide
Query:  ELECR-------RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISS-FDTCN
        ELEC+           +E + A+K+ ++ +L  + KL MYASVT +IPN++D  K SG++V R+KR++ KFEFD  K +S ++TCN
Subjt:  ELECR-------RVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISS-FDTCN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCTGGTTTTTTTCAACACATTGGTGACCAATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACA
AGAACTTTGGGCTCAGAGGAAGCTTTCAATGTATGCTTCGGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAAC
GAGTTGTCCAAAAGTTTGAATTCGACCCAGCTAAGATATCTTCTTTTGATACATGCAATGGCCTTTGGAATATGATTAATTCCCCA
mRNA sequenceShow/hide mRNA sequence
ATGCACCTGGTTTTTTTCAACACATTGGTGACCAATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACA
AGAACTTTGGGCTCAGAGGAAGCTTTCAATGTATGCTTCGGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAAC
GAGTTGTCCAAAAGTTTGAATTCGACCCAGCTAAGATATCTTCTTTTGATACATGCAATGGCCTTTGGAATATGATTAATTCCCCA
Protein sequenceShow/hide protein sequence
MHLVFFNTLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP