; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G16380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIntegrase core domain containing protein
Genome locationChr4:13708697..13709382
RNA-Seq ExpressionCSPI04G16380
SyntenyCSPI04G16380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]3.7e-4157.8Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+ HL+GETPC   F+ + S+++ +  EE       ASSS+   I+ NSLFEQWVTT+LLLL W+YNSMT +VAIQLM F   +DLW+A TQDF GVQS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS
        R EE+FL+Q  +TTRK N+KME+YL + K N DNL Q  S VP + L S VLL L+EVYN+VI V+QGKP+IS
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]5.5e-2955.94Show/hide
Query:  AKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKM
        ++G    +S+S+ + I+ N  +EQWVT+++LLL  IYNSM  +VA+QLM F  AKDLWEAI Q+  G++SR EE FL+ T +TTR+ N KMEDYL I K+
Subjt:  AKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKM

Query:  NADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKPNIS
        NADNL Q  S VP + ++S VLL L+EVYN V AV+QGKP+IS
Subjt:  NADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKPNIS

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.2e-3154.55Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+SHL GE+PCLPK I   +  + S +E A   +   SSS  A +  N  +E+W+TT+LLLL W+YNSMT EV IQLM F  AKDLWEA TQD  G+QS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVP
        R +E+FL QT +TT+K N  ME+YL   K N +NL Q DSLVP
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVP

KGN54432.1 hypothetical protein Csa_012334 [Cucumis sativus]4.5e-4799.03Show/hide
Query:  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP
        MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTS+TTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP
Subjt:  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP

Query:  NIS
        NIS
Subjt:  NIS

TYJ96311.1 uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]3.1e-3255.78Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+ HL+GETPC   F+ + S+++ +  EE       ASSS+   I+ NSLFEQWVTT+LLLL W+YNSMT +VAIQLM F   +DLW+A TQDF GVQS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL
        R EE+FL+Q  +TTRK N+KME+YL + K N DNL Q  S VP + L
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL

TrEMBL top hitse value%identityAlignment
A0A0A0L1H3 Uncharacterized protein2.2e-4799.03Show/hide
Query:  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP
        MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTS+TTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP
Subjt:  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKP

Query:  NIS
        NIS
Subjt:  NIS

A0A5A7SIT7 Uncharacterized protein1.8e-4157.8Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+ HL+GETPC   F+ + S+++ +  EE       ASSS+   I+ NSLFEQWVTT+LLLL W+YNSMT +VAIQLM F   +DLW+A TQDF GVQS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS
        R EE+FL+Q  +TTRK N+KME+YL + K N DNL Q  S VP + L S VLL L+EVYN+VI V+QGKP+IS
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS

A0A5A7VPY0 Uncharacterized protein5.7e-3254.55Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+SHL GE+PCLPK I   +  + S +E A   +   SSS  A +  N  +E+W+TT+LLLL W+YNSMT EV IQLM F  AKDLWEA TQD  G+QS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVP
        R +E+FL QT +TT+K N  ME+YL   K N +NL Q DSLVP
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVP

A0A5D3BCH9 Uncharacterized protein1.5e-3255.78Show/hide
Query:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS
        +L+ HL+GETPC   F+ + S+++ +  EE       ASSS+   I+ NSLFEQWVTT+LLLL W+YNSMT +VAIQLM F   +DLW+A TQDF GVQS
Subjt:  ELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQS

Query:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL
        R EE+FL+Q  +TTRK N+KME+YL + K N DNL Q  S VP + L
Subjt:  RVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVL

A0A5D3E3L7 Uncharacterized protein2.7e-2955.94Show/hide
Query:  AKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKM
        ++G    +S+S+ + I+ N  +EQWVT+++LLL  IYNSM  +VA+QLM F  AKDLWEAI Q+  G++SR EE FL+ T +TTR+ N KMEDYL I K+
Subjt:  AKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKM

Query:  NADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKPNIS
        NADNL Q  S VP + ++S VLL L+EVYN V AV+QGKP+IS
Subjt:  NADNLSQTDSLVPPQ-VLSYVLLELNEVYNMVIAVVQGKPNIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACACCAATCTCGCCGCTGCCATCATCAGGTCTTCCTCAACCAATCCTCAAAGGTTACAAGAGTTAGACAGCCATCTATCCGGTGAGACTCCATGCCTGCCGAA
GTTCATCCCAACAGATTCCAACACGAGTGCTTCAGAAATAGAAGAAGCTAAAGGTGTTGCTCATCGTGCTTCGTCAAGTTTGCAGGCTACAATAATCACCAACTCTTTAT
TTGAACAATGGGTAACCACTAATTTATTGTTGCTTAGATGGATTTATAATTCCATGACATCAGAAGTTGCAATCCAATTAATGAGATTCATCGGTGCTAAAGATCTGTGG
GAAGCAATAACACAAGATTTTGTTGGTGTTCAATCAAGAGTCGAAGAAAACTTCCTCCAACAAACGTCTCGGACAACTAGAAAAGATAATTCCAAAATGGAGGACTACTT
ACATATTACAAAAATGAATGCTGACAATCTTAGTCAAACTGATAGCCTTGTCCCTCCACAAGTCCTTTCATATGTTCTATTGGAATTAAACGAAGTTTACAATATGGTAA
TTGCTGTCGTTCAAGGAAAACCGAATATATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACACCAATCTCGCCGCTGCCATCATCAGGTCTTCCTCAACCAATCCTCAAAGGTTACAAGAGTTAGACAGCCATCTATCCGGTGAGACTCCATGCCTGCCGAA
GTTCATCCCAACAGATTCCAACACGAGTGCTTCAGAAATAGAAGAAGCTAAAGGTGTTGCTCATCGTGCTTCGTCAAGTTTGCAGGCTACAATAATCACCAACTCTTTAT
TTGAACAATGGGTAACCACTAATTTATTGTTGCTTAGATGGATTTATAATTCCATGACATCAGAAGTTGCAATCCAATTAATGAGATTCATCGGTGCTAAAGATCTGTGG
GAAGCAATAACACAAGATTTTGTTGGTGTTCAATCAAGAGTCGAAGAAAACTTCCTCCAACAAACGTCTCGGACAACTAGAAAAGATAATTCCAAAATGGAGGACTACTT
ACATATTACAAAAATGAATGCTGACAATCTTAGTCAAACTGATAGCCTTGTCCCTCCACAAGTCCTTTCATATGTTCTATTGGAATTAAACGAAGTTTACAATATGGTAA
TTGCTGTCGTTCAAGGAAAACCGAATATATCCTAG
Protein sequenceShow/hide protein sequence
MANTNLAAAIIRSSSTNPQRLQELDSHLSGETPCLPKFIPTDSNTSASEIEEAKGVAHRASSSLQATIITNSLFEQWVTTNLLLLRWIYNSMTSEVAIQLMRFIGAKDLW
EAITQDFVGVQSRVEENFLQQTSRTTRKDNSKMEDYLHITKMNADNLSQTDSLVPPQVLSYVLLELNEVYNMVIAVVQGKPNIS