; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G16530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr4:13960756..13961720
RNA-Seq ExpressionCSPI04G16530
SyntenyCSPI04G16530
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0032259 - methylation (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-3378.35Show/hide
Query:  QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        +TA+DIEEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSMAHDA SSR SKKR+SYS DLMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Subjt:  QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-3276Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SYSEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
KAE8649593.1 hypothetical protein Csa_012732 [Cucumis sativus]3.8e-4596.08Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        MDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK +SYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL

Query:  LC
        LC
Subjt:  LC
TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]9.7e-3376Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKR+SYS DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]4.8e-3276Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SYSEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
TrEMBL top hitse value%identityAlignment
A0A0A0L1J1 Uncharacterized protein1.8e-4596.08Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        MDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK +SYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL

Query:  LC
        LC
Subjt:  LC
A0A1S3CC17 uncharacterized protein LOC1034992482.3e-3276Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SYSEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
A0A5A7U7F7 Retrotransposon protein3.6e-3378.35Show/hide
Query:  QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        +TA+DIEEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSMAHDA SSR SKKR+SYS DLMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Subjt:  QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
A0A5A7VGQ0 Retrotransposon protein2.3e-3276Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SYSEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
A0A5D3C7T4 Uncharacterized protein4.7e-3376Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
        M SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKR+SYS DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACAT
GTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAG
AAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAA
mRNA sequenceShow/hide mRNA sequence
CTAGAGGGCTGATAATGAAACATTCAAATCGAGATATTTGGTACATGTTCAAAAACTAACGAAAGAAAAAATTCTTGGAAGCAACATACAAGTAACTCCAATTTAGAGTC
GAAAAGTGAAAATTTTGAAGAACCAGTTCACTATCATAGTAGAGATGATGGGGCCAGCATGTAGTGAGTTTGGTTGAAATGAGGAATGAAAGTGCACTGAGGCAAAGAAA
CATGTGTTCGATGACTAGGTTAAGGTAAGACGATGAATATAATTCATACTTTCTATAAAAGTAAATTATAATATACTTACGTTTGTTAACTTCATATAGGGACACCTCAA
TGCTCGAGGTCTACTGAACAAACCATTTCCTTACTTGTATGACTTGAAAATTGTGTTTGGTAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACT
CACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCC
ACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTC
CAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAAATTACAGACTATTCTTGGAATGAACGTG
AACGATTGTTTAATTGTAGTTGAGTCTCTATTACCTTATCCCATGATGTTGCACAGACTACCCAGCAGAATGGAAGTACATAAAATGCATGTGTATCTTAGGAAGACAAC
TATAATCATCATTAAATGTAACTTTACTTAATTTTCATTTTTGTTTAACCATTTTGGTTATGCTTACTTTTGAAACATACTAGAC
Protein sequenceShow/hide protein sequence
MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC