; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G16610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionHigh mobility group B protein 6
Genome locationChr4:14005958..14007135
RNA-Seq ExpressionCSPI04G16610
SyntenyCSPI04G16610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]1.5e-6697.89Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]1.3e-68100Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]2.2e-6597.18Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]1.5e-5381.94Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCM
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]2.0e-5887.84Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------PTTVSIESCDLSLADELNAVKRKMERLRLDGE
        MQTLHHPL  P+DLPLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENHPP       TT SIESCD SLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------PTTVSIESCDLSLADELNAVKRKMERLRLDGE

Query:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

TrEMBL top hitse value%identityAlignment
A0A0A0L063 Uncharacterized protein6.1e-69100Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

A0A1S3CJ78 high mobility group B protein 61.1e-6597.18Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

A0A5A7SJQ2 High mobility group B protein 67.4e-6797.89Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

A0A5D3CEI7 High mobility group B protein 61.1e-6597.18Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

A0A6J1ISM0 high mobility group B protein 13-like7.2e-5481.94Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCM
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01910.1 unknown protein1.5e-1646.34Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSY
         + Q+ LE++VDRLFRLKEL +Y
Subjt:  SQEQRDLEMEVDRLFRLKELRSY

AT5G01910.2 unknown protein1.5e-1646.34Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSY
         + Q+ LE++VDRLFRLKEL +Y
Subjt:  SQEQRDLEMEVDRLFRLKELRSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGC
CAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGT
CTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGG
ATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAATTGCTGAA
CGTTTTTTTTTTCTTTGGTTAG
mRNA sequenceShow/hide mRNA sequence
CACAAAATTCCAAATCCTTCAGGAAAGAAAAAACCCCTTTTTTTTCCATTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTTTCCATCTCCACTTC
ACACCAATATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCT
TCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATG
TGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGG
AGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAA
TTGCTGAACGTTTTTTTTTTCTTTGGTTAGTTTGAAGTTTTGATTCGTGTTTCATTTGCTGATATTTCTTTTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCT
CAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATTCTTCAGAAT
TCGTAACAGGTTTTTGAAATCGATTCTAAAGTTTAGTGGATTTGCCCTAACTTTCCGATCATTACTACATCTTGTACGGGTTTTCAAAAGTAGAAATTAGAAAAGGAAAT
GGATGTAATACCTCATTATGATTTTCTTTATGCATTGATGGAAGCTTTTGAGTTGTTGTAATCAATGTGATTCTTCCTCCATCTTCTTCTTCTTCTTTTTCTTCACTTCA
ATTAATGTTGGAAAGTGAAGAAACTCCAAATCGTGTTCGTGAATTTTTCTCTCGCCCCTCTATATTCTTCATGATATGTAATGAATTTTGTGAGTGAGAGTTTAGG
Protein sequenceShow/hide protein sequence
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELR
MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMVKLLNVFFFFG