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CSPI04G16950 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16950
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionKirola-like
Genome locationChr4:14371328..14372282
RNA-Seq ExpressionCSPI04G16950
SyntenyCSPI04G16950
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006811 - ion transport (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041978.1 uncharacterized protein E6C27_scaffold67G004150 [Cucumis melo var. makuwa]1.9e-2866.96Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H  PPEL+A VH PQT+ TIPSVQPS S A YI PHA IH LPPNS +P PLLPSN  ALPPT LSYH + +NPQIHS FE GES  HSN NVQ
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKG
            SSRIAQQ+ KG
Subjt:  GSSFSSRIAQQKLKG

KAA0047786.1 chloride channel protein CLC-e [Cucumis melo var. makuwa]1.9e-2864.41Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H PP EL+  VH P  VL IP VQPSSS A YI  HAPIH L PNS +PP LLPSN  ALPPTYLSYH DV+N QIHS FEVGES  +SN N+Q
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
         SS    IAQQ+L+GL Q
Subjt:  GSSFSSRIAQQKLKGLHQ

KAA0048808.1 kirola-like [Cucumis melo var. makuwa]5.2e-2664.29Show/hide
Query:  HVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQGSSFSS
        H PP E++A V  PQT  T PSVQP SS AT I PHAPI  LPP S R PPLLPSN  ALPP  LS+H +V+N +IHS FE+GESLAHSNPNVQ    SS
Subjt:  HVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQGSSFSS

Query:  RIAQQKLKGLHQ
         IAQQ+L+GL +
Subjt:  RIAQQKLKGLHQ

KAA0054450.1 kirola-like [Cucumis melo var. makuwa]5.2e-2662.71Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H  PPEL+A VH PQT+ TIPSVQPS S A YI  HA IH LPPN  +P PL+PSN  ALP T LSYH + +NPQIHS FE GES  HSN NVQ
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
            SSRIAQQ+ KG  Q
Subjt:  GSSFSSRIAQQKLKGLHQ

TYK01068.1 chloride channel protein CLC-e [Cucumis melo var. makuwa]1.5e-2864.41Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H PP EL+  VH P  VL IPSVQPSSS A YI  HAPIH L PNS +PP LLPSN  ALPPTYLSYH DV+N QIHS FEVGES  +S+ N+Q
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
         SS    IAQQ+L+GL Q
Subjt:  GSSFSSRIAQQKLKGLHQ

TrEMBL top hitse value%identityAlignment
A0A5A7U0M6 Chloride channel protein9.3e-2964.41Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H PP EL+  VH P  VL IP VQPSSS A YI  HAPIH L PNS +PP LLPSN  ALPPTYLSYH DV+N QIHS FEVGES  +SN N+Q
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
         SS    IAQQ+L+GL Q
Subjt:  GSSFSSRIAQQKLKGLHQ

A0A5A7U0S5 Kirola-like2.5e-2664.29Show/hide
Query:  HVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQGSSFSS
        H PP E++A V  PQT  T PSVQP SS AT I PHAPI  LPP S R PPLLPSN  ALPP  LS+H +V+N +IHS FE+GESLAHSNPNVQ    SS
Subjt:  HVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQGSSFSS

Query:  RIAQQKLKGLHQ
         IAQQ+L+GL +
Subjt:  RIAQQKLKGLHQ

A0A5D3BPS9 Chloride channel protein7.1e-2964.41Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H PP EL+  VH P  VL IPSVQPSSS A YI  HAPIH L PNS +PP LLPSN  ALPPTYLSYH DV+N QIHS FEVGES  +S+ N+Q
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
         SS    IAQQ+L+GL Q
Subjt:  GSSFSSRIAQQKLKGLHQ

A0A5D3CWE7 Kirola-like2.5e-2662.71Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H  PPEL+A VH PQT+ TIPSVQPS S A YI  HA IH LPPN  +P PL+PSN  ALP T LSYH + +NPQIHS FE GES  HSN NVQ
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKGLHQ
            SSRIAQQ+ KG  Q
Subjt:  GSSFSSRIAQQKLKGLHQ

A0A5D3D376 Reverse transcriptase domain-containing protein9.3e-2966.96Show/hide
Query:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ
        TP    H  PPEL+A VH PQT+ TIPSVQPS S A YI PHA IH LPPNS +P PLLPSN  ALPPT LSYH + +NPQIHS FE GES  HSN NVQ
Subjt:  TPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPNSDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQ

Query:  GSSFSSRIAQQKLKG
            SSRIAQQ+ KG
Subjt:  GSSFSSRIAQQKLKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCAAACGGAGGAGACAAGCACCAGCTTTACTGTCGTTGCCGCCGCCGTCGATGCTTGGATCGGTGTTGCCATGGACAAATGGTTATGTCGCCTTCAGAAAATG
TCGGAAAATGTATTCTCGTCAATTCCACCGTCATCTATGCCGTCAAAACTCTCTCACATGCCTCCACACGCCGCTGCCAAACTTCCACGTGCCGCCGCCAGAGCTATATG
CGCCGGTCCATCTTCCTCAGACAGTTCTAACCATCCCATCTGTGCAACCGTCTTCTTCATTCGCGACCTATATTGTTCCCCATGCCCCGATTCACGGTCTGCCACCTAAT
TCCGACCGGCCACCACCACTTCTGCCATCAAATCGGAATGCCCTGCCACCCACTTACCTTAGTTATCATTTCGATGTTAGGAACCCTCAAATCCACTCAATATTTGAGGT
TGGTGAATCTTTGGCACATTCCAACCCTAACGTGCAAGGTTCCTCTTTTTCTTCGAGAATAGCTCAACAGAAACTGAAAGGGCTTCATCAATAG
mRNA sequenceShow/hide mRNA sequence
TGGAGATGTAACGGCTAGCAAGGGGATTGCCAAATCAATGAGTAATTTAATATGGTTAGAGCAATTGAGACATTGCTATGACAGAGTAATTGGTGTTCAATGGATTGGTT
GGAATTGGTGGGATTCGCCTTAGGGTATTTATGGAAAGATCATAGAAATATTTACCATAATTCCCAATTCCTAAATCTTTTCCTTTTTTATTCCCTTGTGTATTCTATTT
ATTCTTCCTTATTGTACCTATTGTAAAATTGATCAGAAAATAATAAGAAAAAATACCGTGGTTTTTCTCCTTGTACTCGGGTTTTTACATAAATTTGTCTGTTCTTGTTT
CTACTTTCAATATGGTATCAAAGCGGGTCATTGAACAAACCCTAAACAACACAACTAGTGATGGAAATCAAACGGAGGAGACAAGCACCAGCTTTACTGTCGTTGCCGCC
GCCGTCGATGCTTGGATCGGTGTTGCCATGGACAAATGGTTATGTCGCCTTCAGAAAATGTCGGAAAATGTATTCTCGTCAATTCCACCGTCATCTATGCCGTCAAAACT
CTCTCACATGCCTCCACACGCCGCTGCCAAACTTCCACGTGCCGCCGCCAGAGCTATATGCGCCGGTCCATCTTCCTCAGACAGTTCTAACCATCCCATCTGTGCAACCG
TCTTCTTCATTCGCGACCTATATTGTTCCCCATGCCCCGATTCACGGTCTGCCACCTAATTCCGACCGGCCACCACCACTTCTGCCATCAAATCGGAATGCCCTGCCACC
CACTTACCTTAGTTATCATTTCGATGTTAGGAACCCTCAAATCCACTCAATATTTGAGGTTGGTGAATCTTTGGCACATTCCAACCCTAACGTGCAAGGTTCCTCTTTTT
CTTCGAGAATAGCTCAACAGAAACTGAAAGGGCTTCATCAATAGAATGCAGCAATTGAGGCACCTGAGGGACGAC
Protein sequenceShow/hide protein sequence
MEIKRRRQAPALLSLPPPSMLGSVLPWTNGYVAFRKCRKMYSRQFHRHLCRQNSLTCLHTPLPNFHVPPPELYAPVHLPQTVLTIPSVQPSSSFATYIVPHAPIHGLPPN
SDRPPPLLPSNRNALPPTYLSYHFDVRNPQIHSIFEVGESLAHSNPNVQGSSFSSRIAQQKLKGLHQ