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CSPI04G16960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G16960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBeta-galactosidase
Genome locationChr4:14372388..14373308
RNA-Seq ExpressionCSPI04G16960
SyntenyCSPI04G16960
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034029.1 Beta-galactosidase [Cucumis melo var. makuwa]3.2e-5274.07Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM+YLFPHLFSK+D+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSDIW
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]5.5e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]5.5e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

TYK02021.1 Beta-galactosidase [Cucumis melo var. makuwa]3.2e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT EL+CKATFLP SV FQDL+S R I TA H+R +Y+L+DD S SNIS TSLL SYF+TSE D MLWHF LGHPN  YM+YLFPHLF K+D+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PFTL+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]5.5e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

TrEMBL top hitse value%identityAlignment
A0A5A7SXY5 Beta-galactosidase1.6e-5274.07Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM+YLFPHLFSK+D+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSDIW
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

A0A5A7VLQ7 Beta-galactosidase2.7e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

A0A5D3BJK7 Beta-galactosidase2.7e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

A0A5D3BQI5 Beta-galactosidase1.6e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT EL+CKATFLP SV FQDL+S R I TA H+R +Y+L+DD S SNIS TSLL SYF+TSE D MLWHF LGHPN  YM+YLFPHLF K+D+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PFTL+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

A0A5D3C4T4 Beta-galactosidase2.7e-5273.33Show/hide
Query:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS
        +SISKIT+EL+CKA FLP SV FQD+SS R I TA H+R LY+LDDD S S++SR SLL SYF+TSE+D MLWHF LGHPNF YM++LFPHLFSKVD+SS
Subjt:  MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISS

Query:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW
        L+CDVC +AKQHRVSF SQPYKPT+PF L+HSD+W
Subjt:  LTCDVCKKAKQHRVSFSSQPYKPTRPFTLVHSDIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTAGCAAGATTACTCAAGAATTAAACTGCAAAGCAACATTCTTACCTGGTTCTGTTTCTTTTCAAGACCTGAGCTCGAGGAGGATGATTAACACTGCCTGGCA
CAATAGGGATCTTTACTTGCTTGATGATGATGCCTCCTCTAGTAACATTTCTAGAACTAGTCTTTTACCTTCCTACTTTACCACTTCTGAAAAAGATCCTATGTTGTGGC
ATTTCTGTTTAGGCCATCCCAACTTTAAATATATGAGATACCTATTTCCTCATCTCTTTTCTAAAGTTGATATTTCTTCCTTAACTTGTGATGTGTGCAAAAAAGCTAAA
CAACACCGAGTCTCGTTTTCCTCGCAACCCTATAAGCCAACCCGACCTTTTACTCTTGTCCATAGTGATATTTGGTGA
mRNA sequenceShow/hide mRNA sequence
AAGTGTACCTCGGTCTTTTACTCTCATTAGTATTGATGATAAGAATTCTTGGATCCTGGACTCTGGTGCCACAAATCATTTAACTGGTTCCTCTTAAGACTTTGTGTCCT
ACATTCTGTGTGCTGGAAATGAGAAGATAGAATTGTTGATAGCTCCTTGGCTCCCATTGTCGGGAAAGGGCTGATTTCCCTTTTTGACGGGTTCTCATTATAAAATTTGT
TGCATGTGCCACAAATTTCATATAATTTTATGTCGATTAGCAAGATTACTCAAGAATTAAACTGCAAAGCAACATTCTTACCTGGTTCTGTTTCTTTTCAAGACCTGAGC
TCGAGGAGGATGATTAACACTGCCTGGCACAATAGGGATCTTTACTTGCTTGATGATGATGCCTCCTCTAGTAACATTTCTAGAACTAGTCTTTTACCTTCCTACTTTAC
CACTTCTGAAAAAGATCCTATGTTGTGGCATTTCTGTTTAGGCCATCCCAACTTTAAATATATGAGATACCTATTTCCTCATCTCTTTTCTAAAGTTGATATTTCTTCCT
TAACTTGTGATGTGTGCAAAAAAGCTAAACAACACCGAGTCTCGTTTTCCTCGCAACCCTATAAGCCAACCCGACCTTTTACTCTTGTCCATAGTGATATTTGGTGACCA
TCCAAGGTCACTACCTCCTCCGAAAAACGATGATTTGACCTTTATTGATGACTATACTTGTCTTACTTGGGTTTTCTTGATCTCCGACAAATCTGAAGTTACCACTACAT
TCTGGGACTTCTATCACACCATAGAAATGAAATTCAATACAAAGATTGCAATCCTATGAGTGATAATGGACGTGAGTTTCAAAACCACTCTTAACGAATTCTTATCCACT
AAAGGAATTGTTCACAAAAATTCTTGTGCTTACAATCTCCA
Protein sequenceShow/hide protein sequence
MSISKITQELNCKATFLPGSVSFQDLSSRRMINTAWHNRDLYLLDDDASSSNISRTSLLPSYFTTSEKDPMLWHFCLGHPNFKYMRYLFPHLFSKVDISSLTCDVCKKAK
QHRVSFSSQPYKPTRPFTLVHSDIW