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CSPI04G17050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G17050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA exonuclease 4
Genome locationChr4:14480811..14481508
RNA-Seq ExpressionCSPI04G17050
SyntenyCSPI04G17050
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045030.1 apoptosis-enhancing nuclease isoform X1 [Cucumis melo var. makuwa]1.5e-4396.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

TYJ96296.1 apoptosis-enhancing nuclease isoform X1 [Cucumis melo var. makuwa]1.5e-4396.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

XP_004142658.1 apoptosis-enhancing nuclease isoform X2 [Cucumis sativus]6.0e-45100Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

XP_008449328.1 PREDICTED: RNA exonuclease 4-like [Cucumis melo]1.5e-4396.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

XP_011653750.1 apoptosis-enhancing nuclease isoform X1 [Cucumis sativus]6.0e-45100Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

TrEMBL top hitse value%identityAlignment
A0A1S3BLT2 RNA exonuclease 47.2e-4496.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

A0A1S3CNZ6 RNA exonuclease 43.6e-4395.4Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMT S+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

A0A5A7TPB9 RNA exonuclease 47.2e-4496.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

A0A5A7TYQ2 RNA exonuclease 43.6e-4395.4Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMT S+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

A0A5D3BBM9 RNA exonuclease 47.2e-4496.55Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT
        YDIRQDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSR+NFKCWCHDSRRVMQT
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein1.6e-1143.21Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD
        Y I+   H+ YE+CVS MRLYKRMR  +H            C      N L+S    DLEKM  +ELY+ S S ++CWC D
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD

AT2G48100.2 Exonuclease family protein1.6e-1143.21Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD
        Y I+   H+ YE+CVS MRLYKRMR  +H            C      N L+S    DLEKM  +ELY+ S S ++CWC D
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD

AT2G48100.3 Exonuclease family protein1.6e-1143.21Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD
        Y I+   H+ YE+CVS MRLYKRMR  +H            C      N L+S    DLEKM  +ELY+ S S ++CWC D
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLEKMTPDELYEMSRSNFKCWCHD

AT3G27970.1 Exonuclease family protein2.3e-1039.29Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSA---KDLEKMTPDELYEMSRSNFKCWCHDS
        YD+     DPYE+CV+ MRLY RMR   H  +   L+         A N  +  A    + E+M+PDE+  +SRS++ CWC DS
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSA---KDLEKMTPDELYEMSRSNFKCWCHDS

AT5G40310.1 Exonuclease family protein1.2e-1140.74Show/hide
Query:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDS
        YDI     DPYE+CV+ MRLY RMR   H  +   L+           N  +    +LE+M+P+EL ++SRS++ CWC DS
Subjt:  YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAATGCTGTCTTCATAGGTATGATATTCGGCAAGATGGGCACGACCCTTACGAAAACTGTGTTTCAGTAATGCGATTGTATAAAAGAATGCGTAGTCTTGATCA
CCATAGACAAGTTATGACCCTGTCAATTACTCCTTCCTGTATCCAGTATGTTGCTCCCAATCTTGATTCCCATAGTGCAAAAGATCTTGAAAAGATGACTCCAGATGAAC
TTTATGAGATGTCGAGATCAAACTTTAAGTGTTGGTGTCATGACTCCAGACGAGTTATGCAGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAATGCTGTCTTCATAGGTATGATATTCGGCAAGATGGGCACGACCCTTACGAAAACTGTGTTTCAGTAATGCGATTGTATAAAAGAATGCGTAGTCTTGATCA
CCATAGACAAGTTATGACCCTGTCAATTACTCCTTCCTGTATCCAGTATGTTGCTCCCAATCTTGATTCCCATAGTGCAAAAGATCTTGAAAAGATGACTCCAGATGAAC
TTTATGAGATGTCGAGATCAAACTTTAAGTGTTGGTGTCATGACTCCAGACGAGTTATGCAGACTTAGGAGCCAATCATTTTTGTTTTTGCTGCTAAGAAAAGGGCATTG
ATCATTGTGGTGTCTGCAGTTTGTATAGAGAATTCTCATTTTGTTGAGAAGGGAGGGAGACTTGTTTGTTAAAAAATGGGAATGACCTTATTTTTTGTATCTATTTAGCC
TTTCAAGACTTAATACGGTAAAGGTGCAGTTCCCACATCGGAAGTGTCTTACCAGTTTATGGTAGTGTTTTAGGTCTCTTATGATGTTTGTTTTCTGATATAAACAATGA
ACTTTGAAAACGTAAGGACGCGCTTTGTTGAAGGTGTTTTTGAAGGGTGAATCAGTTTGGGCATCGATAGCCCATGTTTTTCTTT
Protein sequenceShow/hide protein sequence
MGECCLHRYDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT