CuGenDBv2

Gene ID	CSPI04G17290
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr4:14801880..14803710
RNA-Seq Expression	CSPI04G17290
Synteny	CSPI04G17290
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041373 - Reverse transcriptase, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.0e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.0e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIV7 Ty3/gypsy retrotransposon protein

1.4e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

A0A5A7U2S1 Ty3/gypsy retrotransposon protein

1.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

A0A5A7U6J3 Ty3/gypsy retrotransposon protein

1.4e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

A0A5D3CXB1 Ty3/gypsy retrotransposon protein

1.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

A0A5D3DI73 Ty3/gypsy retrotransposon protein

1.9e-169

50.98

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MPFGLTNAP+TFQ+LMN +F+ FLR+FVLVFFDDILIYS+G+EEH Q +E+VLE+LRE++LY N  KC FA +++ YLGH IS +G+EVDPE IR++K+W
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS
        P   NV+E+RGFLGLTGYYRR VQNY SI+APLTQLLK  A++W EE E AF KL+            D +    +E+DASG+G+GAVL+Q+K+P+A+FS
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNKRPIAFFS

Query:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA
          L  RD A+PV+E ELMA+V AVQ WRPYLLG+KF VKTDQ SLKFLLEQR            LLGYSFEV+YKPGLENKAADALSR+ P+  LN LTA
Subjt:  HTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLGKKFLVKTDQCSLKFLLEQR------------LLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTA

Query:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC
        PAL DV+VIQ+EV +D  ++EIL  ++                                                     KR+ GEL+W+GMK D+QKYC
Subjt:  PALTDVKVIQEEVEQDSHMKEILLKLQR-------------------------------------------------GEKKRLTGELFWEGMKHDIQKYC

Query:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------
        EEC+ CQKNKS AL+PAGLLLPLEIP+ +W+DISMDFIEGLPK+ G+EVI V+VDR                   A   +++ +  H             
Subjt:  EECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFR-----------------ARPTIRKPMGKH-------------

Query:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST
                                        VVN++VE YLRCFC E+P++W +W+HWAEYWYN T+  S+G+TPFQAVYGR+P PLI Y +  T NST
Subjt:  --------------------------------VVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPFQAVYGRMPLPLIYYRDSVTTNST

Query:  IDDQLKEREI
        +D QL++R++
Subjt:  IDDQLKEREI

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

8.2e-53

26.36

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MP+G++ APA FQ  +N I        V+ + DDILI+S+   EH + ++ VL+ L+   L  N+ KC F  S+V+++G+ IS +G     ENI  + QW
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----
            N KE+R FLG   Y R+ +     +  PL  LLK  +R ++W      A   ++            D      +ETDAS   +GAVL Q       
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----

Query:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL
         P+ ++S  +        V + E++AI+ +++HWR YL    + F + TD  +L            K L   +L    ++FE+ Y+PG  N  ADALSR+
Subjt:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL

Query:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------
                       +N++   ++TD                        K ++E ++                 D+ +   ++K    E K        
Subjt:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------

Query:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------
            +     W+G++  IQ+Y + C TCQ NKS    P G L P+    R W  +SMDFI  LP+++GY  +FV+VDRF ++  I  P  K +       
Subjt:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------

Query:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF
                                                                 N+ VE  LRC C   P  WV  I   +  YNN    +  +TPF
Subjt:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF

Query:  QAVY----GRMPLPLIYYRDSVTTNS
        + V+       PL L  + D    NS
Subjt:  QAVY----GRMPLPLIYYRDSVTTNS

P0CT35 Transposon Tf2-2 polyprotein

8.2e-53

26.36

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MP+G++ APA FQ  +N I        V+ + DDILI+S+   EH + ++ VL+ L+   L  N+ KC F  S+V+++G+ IS +G     ENI  + QW
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----
            N KE+R FLG   Y R+ +     +  PL  LLK  +R ++W      A   ++            D      +ETDAS   +GAVL Q       
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----

Query:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL
         P+ ++S  +        V + E++AI+ +++HWR YL    + F + TD  +L            K L   +L    ++FE+ Y+PG  N  ADALSR+
Subjt:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL

Query:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------
                       +N++   ++TD                        K ++E ++                 D+ +   ++K    E K        
Subjt:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------

Query:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------
            +     W+G++  IQ+Y + C TCQ NKS    P G L P+    R W  +SMDFI  LP+++GY  +FV+VDRF ++  I  P  K +       
Subjt:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------

Query:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF
                                                                 N+ VE  LRC C   P  WV  I   +  YNN    +  +TPF
Subjt:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF

Query:  QAVY----GRMPLPLIYYRDSVTTNS
        + V+       PL L  + D    NS
Subjt:  QAVY----GRMPLPLIYYRDSVTTNS

P0CT36 Transposon Tf2-3 polyprotein

8.2e-53

26.36

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MP+G++ APA FQ  +N I        V+ + DDILI+S+   EH + ++ VL+ L+   L  N+ KC F  S+V+++G+ IS +G     ENI  + QW
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----
            N KE+R FLG   Y R+ +     +  PL  LLK  +R ++W      A   ++            D      +ETDAS   +GAVL Q       
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----

Query:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL
         P+ ++S  +        V + E++AI+ +++HWR YL    + F + TD  +L            K L   +L    ++FE+ Y+PG  N  ADALSR+
Subjt:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL

Query:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------
                       +N++   ++TD                        K ++E ++                 D+ +   ++K    E K        
Subjt:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------

Query:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------
            +     W+G++  IQ+Y + C TCQ NKS    P G L P+    R W  +SMDFI  LP+++GY  +FV+VDRF ++  I  P  K +       
Subjt:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------

Query:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF
                                                                 N+ VE  LRC C   P  WV  I   +  YNN    +  +TPF
Subjt:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF

Query:  QAVY----GRMPLPLIYYRDSVTTNS
        + V+       PL L  + D    NS
Subjt:  QAVY----GRMPLPLIYYRDSVTTNS

P0CT37 Transposon Tf2-4 polyprotein

8.2e-53

26.36

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MP+G++ APA FQ  +N I        V+ + DDILI+S+   EH + ++ VL+ L+   L  N+ KC F  S+V+++G+ IS +G     ENI  + QW
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----
            N KE+R FLG   Y R+ +     +  PL  LLK  +R ++W      A   ++            D      +ETDAS   +GAVL Q       
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----

Query:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL
         P+ ++S  +        V + E++AI+ +++HWR YL    + F + TD  +L            K L   +L    ++FE+ Y+PG  N  ADALSR+
Subjt:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL

Query:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------
                       +N++   ++TD                        K ++E ++                 D+ +   ++K    E K        
Subjt:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------

Query:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------
            +     W+G++  IQ+Y + C TCQ NKS    P G L P+    R W  +SMDFI  LP+++GY  +FV+VDRF ++  I  P  K +       
Subjt:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------

Query:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF
                                                                 N+ VE  LRC C   P  WV  I   +  YNN    +  +TPF
Subjt:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF

Query:  QAVY----GRMPLPLIYYRDSVTTNS
        + V+       PL L  + D    NS
Subjt:  QAVY----GRMPLPLIYYRDSVTTNS

P0CT41 Transposon Tf2-12 polyprotein

8.2e-53

26.36

Show/hide

Query:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW
        MP+G++ APA FQ  +N I        V+ + DDILI+S+   EH + ++ VL+ L+   L  N+ KC F  S+V+++G+ IS +G     ENI  + QW
Subjt:  MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQW

Query:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----
            N KE+R FLG   Y R+ +     +  PL  LLK  +R ++W      A   ++            D      +ETDAS   +GAVL Q       
Subjt:  PVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLK--IRAFRWNEEVEGAFSKLQ------------DAHDDTAVETDASGYGIGAVLMQNK-----

Query:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL
         P+ ++S  +        V + E++AI+ +++HWR YL    + F + TD  +L            K L   +L    ++FE+ Y+PG  N  ADALSR+
Subjt:  RPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLLG--KKFLVKTDQCSL------------KFLLEQRLL--GYSFEVVYKPGLENKAADALSRL

Query:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------
                       +N++   ++TD                        K ++E ++                 D+ +   ++K    E K        
Subjt:  PPSVR----------LNYLTAPALTD-----------------------VKVIQEEVE----------------QDSHMKEILLKLQRGEKKR-------

Query:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------
            +     W+G++  IQ+Y + C TCQ NKS    P G L P+    R W  +SMDFI  LP+++GY  +FV+VDRF ++  I  P  K +       
Subjt:  ----LTGELFWEGMKHDIQKYCEECVTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHV-------

Query:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF
                                                                 N+ VE  LRC C   P  WV  I   +  YNN    +  +TPF
Subjt:  --------------------------------------------------------VNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVTPF

Query:  QAVY----GRMPLPLIYYRDSVTTNS
        + V+       PL L  + D    NS
Subjt:  QAVY----GRMPLPLIYYRDSVTTNS

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.7e-25

47.27

Show/hide

Query:  IVLEVLRENKLYTNKKKCSFAYSKVEYLG--HIISGRGVEVDPENIRSIKQWPVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEV
        +VL++  +++ Y N+KKC+F   ++ YLG  HIISG GV  DP  + ++  WP   N  E+RGFLGLTGYYRR V+NY  I  PLT+LLK  + +W E  
Subjt:  IVLEVLRENKLYTNKKKCSFAYSKVEYLG--HIISGRGVEVDPENIRSIKQWPVSPNVKEVRGFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEV

Query:  EGAFSKLQDA
          AF  L+ A
Subjt:  EGAFSKLQDA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGTTCGGGTTGACTAATGCTCCAGCAACATTCCAATCCCTTATGAATGCTATTTTCCGGTCATTTCTGAGGAAGTTTGTTCTTGTGTTTTTCGACGACATTTTAAT
TTATAGCAGAGGACTTGAAGAACATTGTCAGCGTATGGAGATAGTGCTAGAGGTACTAAGAGAGAACAAGCTTTATACTAATAAGAAGAAATGTAGTTTCGCTTATTCGA
AGGTAGAATATTTGGGCCATATAATTTCAGGAAGAGGTGTTGAGGTGGATCCTGAAAATATTCGGTCTATTAAGCAATGGCCAGTTTCACCAAATGTGAAGGAGGTCAGG
GGATTTCTTGGGCTGACTGGATATTATAGGCGTTTAGTTCAAAACTACAGATCGATTGCAGCCCCACTGACTCAGTTATTGAAAATCAGAGCCTTTAGGTGGAATGAGGA
AGTTGAGGGAGCATTTAGCAAATTGCAAGACGCCCATGATGACACTGCCGTGGAAACAGATGCATCCGGTTATGGAATTGGGGCAGTGTTGATGCAGAACAAAAGGCCAA
TTGCTTTCTTTAGCCATACATTAGGTATGAGAGATAGTGCCAAGCCTGTGCATGAGCATGAGTTGATGGCAATAGTTATGGCTGTGCAGCATTGGAGGCCATATCTGTTG
GGTAAGAAATTCCTGGTGAAGACTGATCAGTGTTCCCTTAAGTTTTTGCTAGAGCAAAGGTTGCTTGGCTACTCCTTTGAGGTGGTATATAAGCCTGGATTGGAAAACAA
AGCCGCGGATGCTCTGTCACGCTTACCACCATCAGTTCGTCTTAATTACCTCACAGCTCCAGCATTGACTGATGTAAAGGTGATCCAAGAAGAAGTGGAACAGGATTCGC
ACATGAAGGAGATATTGTTAAAGCTTCAAAGAGGAGAGAAAAAGAGGTTGACAGGAGAGTTGTTTTGGGAGGGTATGAAGCATGATATACAGAAATACTGTGAAGAGTGT
GTGACTTGTCAAAAAAATAAATCATTAGCTTTGACTCCGGCTGGGTTGCTGTTACCTTTAGAGATACCGAATCGGGTGTGGAATGACATTTCTATGGATTTCATTGAAGG
GTTACCAAAGGCGGCAGGATATGAAGTTATATTTGTGATAGTTGATCGTTTTAGAGCACGGCCTACCATCCGCAAACCGATGGGTAAACACGTAGTAAACAGGGCTGTGG
AGATTTACTTGCGCTGTTTTTGCTGTGAAAGGCCGAAAGAATGGGTTAGGTGGATTCATTGGGCGGAGTATTGGTATAATAATACACATCAACAGTCATTGGGAGTTACC
CCATTCCAGGCCGTGTATGGAAGAATGCCACTACCGCTTATCTATTATAGAGATAGTGTGACTACAAATTCCACCATTGATGATCAGTTAAAGGAAAGGGAAATAGCCTA
G

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPFGLTNAPATFQSLMNAIFRSFLRKFVLVFFDDILIYSRGLEEHCQRMEIVLEVLRENKLYTNKKKCSFAYSKVEYLGHIISGRGVEVDPENIRSIKQWPVSPNVKEVR
GFLGLTGYYRRLVQNYRSIAAPLTQLLKIRAFRWNEEVEGAFSKLQDAHDDTAVETDASGYGIGAVLMQNKRPIAFFSHTLGMRDSAKPVHEHELMAIVMAVQHWRPYLL
GKKFLVKTDQCSLKFLLEQRLLGYSFEVVYKPGLENKAADALSRLPPSVRLNYLTAPALTDVKVIQEEVEQDSHMKEILLKLQRGEKKRLTGELFWEGMKHDIQKYCEEC
VTCQKNKSLALTPAGLLLPLEIPNRVWNDISMDFIEGLPKAAGYEVIFVIVDRFRARPTIRKPMGKHVVNRAVEIYLRCFCCERPKEWVRWIHWAEYWYNNTHQQSLGVT
PFQAVYGRMPLPLIYYRDSVTTNSTIDDQLKEREIA

CSPI04G17290 (gene) of Cucumber (PI 183967) v1 genome