CuGenDBv2

Gene ID	CSPI04G17500
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Conserved oligomeric Golgi complex subunit 6
Genome location	Chr4:15019515..15020282
RNA-Seq Expression	CSPI04G17500
Synteny	CSPI04G17500
Gene Ontology terms	GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0017119 - Golgi transport complex (cellular component)
InterPro domains	IPR010490 - Conserved oligomeric Golgi complex subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649614.1 hypothetical protein Csa_012223 [Cucumis sativus]

2.0e-59

79.76

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL---ESLKAFFGHVLGSE
        MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQ   T     + +CL   Q   +G +  + ++      ESLKAFFGHVLGSE
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL---ESLKAFFGHVLGSE

Query:  SFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI
        SFLPKFELLQVPKLRTEACVQVARSLSEADKLIY+TIMDPNNRYPDPTACKASSKPDK DFGNITIEI
Subjt:  SFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI

XP_004142643.1 conserved oligomeric Golgi complex subunit 6 [Cucumis sativus]

1.6e-48

59.61

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQSSPA A+Q+ ETPSKIFLINCLCAIQQPLS HEVAAEYV KL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDPNN Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

XP_008444218.2 PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis melo]

1.1e-49

60.59

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQS PA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDPNN Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

XP_022135456.1 conserved oligomeric Golgi complex subunit 6 [Momordica charantia]

1.3e-47

57.01

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA E  KSKG+G ISRRGRT S S QNSKSSVDALLSQSSPA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVA+EYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIY+ IMDP+N Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDPTACKASSKPDK
         DP +  A   PD+
Subjt:  PDPTACKASSKPDK

XP_038899282.1 conserved oligomeric Golgi complex subunit 6 [Benincasa hispida]

2.0e-51

62.07

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGSG ISRRGRT SGSGQNSKSSVDALLSQSSPA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDP+N Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L1U3 Conserved oligomeric Golgi complex subunit 6

7.5e-49

59.61

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQSSPA A+Q+ ETPSKIFLINCLCAIQQPLS HEVAAEYV KL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDPNN Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

A0A1S3BAN8 Conserved oligomeric Golgi complex subunit 6

5.2e-50

60.59

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQS PA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDPNN Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

A0A5A7UEV6 Conserved oligomeric Golgi complex subunit 6

5.2e-50

60.59

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQS PA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIYD IMDPNN Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDP
        PDP
Subjt:  PDP

A0A6J1C0T5 Conserved oligomeric Golgi complex subunit 6

6.4e-48

57.01

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA E  KSKG+G ISRRGRT S S QNSKSSVDALLSQSSPA ASQ+ ETPSKIFLINCLCAIQQPLSGHEVA+EYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY
                                                  ESLKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+EA +LIY+ IMDP+N Y
Subjt:  ------------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRY

Query:  PDPTACKASSKPDK
         DP +  A   PD+
Subjt:  PDPTACKASSKPDK

A0A6J1IV23 Conserved oligomeric Golgi complex subunit 6

3.2e-47

57.21

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA E  KSKG+G ISRRGR  + S QNSKSSVDALLSQSSPA ASQ+ ETPSKIFLINCL AIQQP+SGHEVAAEYVKKL                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC
                                            E+LKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+E  +LIY+ IMDPNN YPDP + 
Subjt:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC

Query:  KASSKPDK
         A   PD+
Subjt:  KASSKPDK

SwissProt top hits

e value

%identity

Alignment

Q6NMI3 Conserved oligomeric Golgi complex subunit 6

3.3e-33

46.15

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA E  KSK SG + RR RT+S S Q   +SVDALLS SSP+   QN ETPSKIFLINCLCAIQQPL  H+VA++YV  +                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC
                                            E LKAFFG VLGSE  LP+FE +QVPKLR+EACV+VA++L+EA ++IY  + D  N YPDP + 
Subjt:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC

Query:  KASSKPDK
         A   PD+
Subjt:  KASSKPDK

Arabidopsis top hits

e value

%identity

Alignment

AT1G31780.1 CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

2.3e-34

46.15

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Query:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------
        MCEQA E  KSK SG + RR RT+S S Q   +SVDALLS SSP+   QN ETPSKIFLINCLCAIQQPL  H+VA++YV  +                 
Subjt:  MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKL-----------------

Query:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC
                                            E LKAFFG VLGSE  LP+FE +QVPKLR+EACV+VA++L+EA ++IY  + D  N YPDP + 
Subjt:  ------------------------------------ESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTAC

Query:  KASSKPDK
         A   PD+
Subjt:  KASSKPDK

Sequences

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CDS sequence

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ATGTGTGAGCAAGCAACAGAAATTCGCAAGTCTAAGGGATCTGGCCTCATATCAAGAAGGGGTAGGACGACTTCTGGTTCCGGTCAGAATAGCAAATCATCAGTAGATGC
ACTATTGTCCCAAAGCAGCCCTGCTCTAGCCTCTCAGAACATTGAAACACCTTCAAAGATCTTTCTGATCAACTGTCTATGTGCCATCCAACAGCCATTATCTGGCCACG
AGGTTGCAGCTGAATATGTCAAGAAACTTGAAAGCTTGAAAGCTTTCTTTGGGCATGTTTTGGGAAGTGAGAGTTTCCTTCCTAAGTTTGAGCTATTACAGGTTCCTAAA
CTGCGAACGGAAGCCTGTGTTCAAGTGGCTCGATCACTCTCTGAAGCTGACAAACTTATATACGACACAATCATGGATCCAAACAACAGGTACCCAGACCCCACTGCGTG
CAAGGCATCCTCCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTAA

mRNA sequence

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Protein sequence

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MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQNIETPSKIFLINCLCAIQQPLSGHEVAAEYVKKLESLKAFFGHVLGSESFLPKFELLQVPK
LRTEACVQVARSLSEADKLIYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI

CSPI04G17500 (gene) of Cucumber (PI 183967) v1 genome