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CSPI04G17580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G17580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationChr4:15054196..15057337
RNA-Seq ExpressionCSPI04G17580
SyntenyCSPI04G17580
Gene Ontology termsNA
InterPro domainsIPR001357 - BRCT domain
IPR036420 - BRCT domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031745892.1 DNA topoisomerase 2-binding protein 1-A-like isoform X1 [Cucumis sativus]3.2e-5497.22Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ

Query:  TESQEEVL
        TESQ+  L
Subjt:  TESQEEVL

XP_031745896.1 DNA topoisomerase 2-binding protein 1-A-like isoform X3 [Cucumis sativus]3.2e-5497.22Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ

Query:  TESQEEVL
        TESQ+  L
Subjt:  TESQEEVL

XP_031745897.1 DNA topoisomerase 2-binding protein 1-A-like isoform X4 [Cucumis sativus]3.2e-5497.22Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ

Query:  TESQEEVL
        TESQ+  L
Subjt:  TESQEEVL

XP_031745898.1 DNA topoisomerase 2-binding protein 1-A-like isoform X5 [Cucumis sativus]3.2e-5497.22Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ

Query:  TESQEEVL
        TESQ+  L
Subjt:  TESQEEVL

XP_031745900.1 DNA topoisomerase 2-binding protein 1-A-like isoform X7 [Cucumis sativus]3.2e-5497.22Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQ

Query:  TESQEEVL
        TESQ+  L
Subjt:  TESQEEVL

TrEMBL top hitse value%identityAlignment
A0A0A0L359 BRCT domain-containing protein2.5e-36100Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKR
        FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKR
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKR

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X17.7e-3037.74Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------
        FVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIYECV Q                                                        
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------IFPPDC
                                                                                                      IFPPDC
Subjt:  ----------------------------------------------------------------------------------------------IFPPDC

Query:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQEEV
        SLVGQDHSETS IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ  V
Subjt:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQEEV

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X27.7e-3037.8Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------
        FVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIYECV Q                                                        
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------IFPPDC
                                                                                                      IFPPDC
Subjt:  ----------------------------------------------------------------------------------------------IFPPDC

Query:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ
        SLVGQDHSETS IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ
Subjt:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X27.7e-3037.8Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------
        FVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIYECV Q                                                        
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------IFPPDC
                                                                                                      IFPPDC
Subjt:  ----------------------------------------------------------------------------------------------IFPPDC

Query:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ
        SLVGQDHSETS IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ
Subjt:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X27.7e-3037.8Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------
        FVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIYECV Q                                                        
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ--------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------IFPPDC
                                                                                                      IFPPDC
Subjt:  ----------------------------------------------------------------------------------------------IFPPDC

Query:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ
        SLVGQDHSETS IG +SNQWSKRAERKEDV NST EDGTVGI DGFSETQTESQ
Subjt:  SLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSETQTESQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein7.1e-0422.78Show/hide
Query:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ-IFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSET
        +V  +++ +THL+C   +G KY+ A K+G   +   W+ ECV +     +   +     E  P+       S+ A+  + V N  +E       +G  E 
Subjt:  FVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ-IFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGICDGFSET

Query:  QTESQEEVLEKKSRGNWNSQKTDHNIVFRTPRFQESIQEVQDSGNFPFKREGDRPTRVGRQYFQKNYDQVQEERQEDKFH
        ++ S  E+     +   N +   H++  RT R    ++  ++SG     R+G +  RV +Q   +N   ++ + + D  H
Subjt:  QTESQEEVLEKKSRGNWNSQKTDHNIVFRTPRFQESIQEVQDSGNFPFKREGDRPTRVGRQYFQKNYDQVQEERQEDKFH

AT1G77320.1 transcription coactivators3.2e-1258.82Show/hide
Query:  SILLFLDFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ
        S++L  DFVE+LT+KVTHLIC F  G KY  A KWG   +T +W+YECV Q
Subjt:  SILLFLDFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ

AT1G77320.2 transcription coactivators3.2e-1258.82Show/hide
Query:  SILLFLDFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ
        S++L  DFVE+LT+KVTHLIC F  G KY  A KWG   +T +W+YECV Q
Subjt:  SILLFLDFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTTGTGGGATACCAATGGGCACATTTTCTATTCTCCTCTTCCTTGATTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGG
GACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGCCAGATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAG
ACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTGGGCAATTCTACTACTGAAGATGGGACTGTGGGCATA
TGTGATGGCTTTAGTGAAACACAAACAGAGTCTCAGGAAGAGGTTTTAGAGAAAAAATCAAGAGGCAATTGGAACTCACAGAAGACGGATCACAACATAGTTTTTCGAAC
TCCAAGATTCCAAGAATCCATCCAAGAAGTTCAAGACTCGGGAAATTTTCCATTCAAAAGGGAAGGCGATAGACCAACCCGAGTAGGAAGGCAATATTTTCAGAAAAATT
ATGACCAAGTTCAAGAAGAAAGACAAGAAGATAAATTCCACATACCTTCATTCCTTGGCAATTCATACTTCAAAACTTCTCTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTTGTGGGATACCAATGGGCACATTTTCTATTCTCCTCTTCCTTGATTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGG
GACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGCCAGATTTTCCCGCCAGACTGTTCGCTTGTTGGTCAAG
ACCATTCAGAAACTTCTCCAATTGGTGCTTTATCTAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGATGTGGGCAATTCTACTACTGAAGATGGGACTGTGGGCATA
TGTGATGGCTTTAGTGAAACACAAACAGAGTCTCAGGAAGAGGTTTTAGAGAAAAAATCAAGAGGCAATTGGAACTCACAGAAGACGGATCACAACATAGTTTTTCGAAC
TCCAAGATTCCAAGAATCCATCCAAGAAGTTCAAGACTCGGGAAATTTTCCATTCAAAAGGGAAGGCGATAGACCAACCCGAGTAGGAAGGCAATATTTTCAGAAAAATT
ATGACCAAGTTCAAGAAGAAAGACAAGAAGATAAATTCCACATACCTTCATTCCTTGGCAATTCATACTTCAAAACTTCTCTTGATTGA
Protein sequenceShow/hide protein sequence
MDVCGIPMGTFSILLFLDFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYECVSQIFPPDCSLVGQDHSETSPIGALSNQWSKRAERKEDVGNSTTEDGTVGI
CDGFSETQTESQEEVLEKKSRGNWNSQKTDHNIVFRTPRFQESIQEVQDSGNFPFKREGDRPTRVGRQYFQKNYDQVQEERQEDKFHIPSFLGNSYFKTSLD