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CSPI04G17620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G17620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon Tf2-6 polyprotein
Genome locationChr4:15112885..15113208
RNA-Seq ExpressionCSPI04G17620
SyntenyCSPI04G17620
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKU61934.1 putative mitochondrial protein [Dendrobium catenatum]2.0e-3671.96Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M S P+L +PDF+Q FV+ETDASGVG+GAVLMQN RP+AFFS+ L    R K+VYERELMAIVLA+QKWRPYLLG+ FVVRTDQ+SLK+LLEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW+AKL
Subjt:  QRWIAKL

PKU83997.1 putative mitochondrial protein [Dendrobium catenatum]9.8e-3670.09Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M +VP+L +P+F QSFV+ETDASG G+GAVLMQN RPVA+FSQ L    R K+VYERELMAIVLA+QKWRPYLLG+ F+VRTDQ+SLK+LLEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW++KL
Subjt:  QRWIAKL

XP_010680400.1 PREDICTED: uncharacterized protein LOC104895554 isoform X1 [Beta vulgaris subsp. vulgaris]4.9e-3566.36Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M++ P+L +PDFSQ FV+E DASG G+GAVLMQN RP+AF+S  L    R K++YE+ELMAIV+AVQKWR YLLG+ FV+RTDQKSLKF++EQR +G EY
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW++KL
Subjt:  QRWIAKL

XP_024030695.1 uncharacterized protein LOC112094326 [Morus notabilis]2.9e-3568.22Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M +VP+L +PDFSQ FV+E+DASG GIGA+LMQ QRP+A+FSQ L +  R K+VYERELMA+VLA+QKWR YLLG+ F+VRTDQ+SLKFLLEQR +G E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        Q+W+ KL
Subjt:  QRWIAKL

XP_028552250.1 uncharacterized protein LOC114580023 [Dendrobium catenatum]3.7e-3569.16Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M S P+L +PDF+Q FV+ETDAS VG+GAVLMQN RP+AFFS+ L    R K+VYERELMAIVLA+QKWRPYLLG+ F+VRTDQ+SLK+ LEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW+AKL
Subjt:  QRWIAKL

TrEMBL top hitse value%identityAlignment
A0A2I0VF04 Putative mitochondrial protein9.6e-3771.96Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M S P+L +PDF+Q FV+ETDASGVG+GAVLMQN RP+AFFS+ L    R K+VYERELMAIVLA+QKWRPYLLG+ FVVRTDQ+SLK+LLEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW+AKL
Subjt:  QRWIAKL

A0A2I0VWY1 Putative mitochondrial protein4.0e-3569.16Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M +VP+L +PDF+Q FVLETDASG G+GAVLMQN R +A+FSQ L    R K+VYERELMAIVLA+QKWRPYLLG+ F+VRTDQ+SLK+LLEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW++KL
Subjt:  QRWIAKL

A0A2I0X7V3 Putative mitochondrial protein4.7e-3670.09Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M +VP+L +P+F QSFV+ETDASG G+GAVLMQN RPVA+FSQ L    R K+VYERELMAIVLA+QKWRPYLLG+ F+VRTDQ+SLK+LLEQR +  E+
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        QRW++KL
Subjt:  QRWIAKL

A0A5A7T3M0 Transposon Tf2-1 polyprotein isoform X15.2e-3568.22Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M+++P+L +PDFS  F +ETDASG G+GAVLMQN+RP+AFFS  L +  R K VYER+LMA+VLAVQ+WRPYLLG+ FVV+TDQ+SLKFLLEQR I  +Y
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        Q+WIAKL
Subjt:  QRWIAKL

A0A5D3BEN4 Transposon Tf2-1 polyprotein isoform X15.2e-3568.22Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        M+++P+L +PDFS  F +ETDASG G+GAVLMQN+RP+AFFS  L +  R K VYER+LMA+VLAVQ+WRPYLLG+ FVV+TDQ+SLKFLLEQR I  +Y
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        Q+WIAKL
Subjt:  QRWIAKL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.9e-1438.83Show/hide
Query:  PMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEYQRWI
        P+L +PDF++ F L TDAS V +GAVL Q+  P+++ S+ L       +  E+EL+AIV A + +R YLLG+ F + +D + L +L   +    +  RW 
Subjt:  PMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEYQRWI

Query:  AKL
         KL
Subjt:  AKL

P10394 Retrovirus-related Pol polyprotein from transposon 4121.7e-1143.62Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQN----QRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFL
        +I+  +L  PDFS+ F + TDAS    GAVL QN    Q PVA+ S+A       K+  E+EL AI  A+  +RPY+ GK F V+TD + L +L
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQN----QRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy5.1e-1140.4Show/hide
Query:  MLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLG-KPFVVRTDQKSLKFLLEQRAIGGEYQRW
        +L  PDF + F L TDAS  GIGAVL Q  RP+   S+ L    +  A  EREL+AIV A+ K + +L G +   + TD + L F +  R    + +RW
Subjt:  MLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLG-KPFVVRTDQKSLKFLLEQRAIGGEYQRW

P20825 Retrovirus-related Pol polyprotein from transposon 2971.4e-1640.19Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY
        +I  P+L +PDF + FVL TDAS + +GAVL QN  P++F S+ L       +  E+EL+AIV A + +R YLLG+ F++ +D + L++L   +  G + 
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEY

Query:  QRWIAKL
        +RW  +L
Subjt:  QRWIAKL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.7e-1136.61Show/hide
Query:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQN----QRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFV-VRTDQKSLKFLLEQRA
        + S  +L  P F++ F L TDAS   IGAVL Q+     RP+A+ S++L  T    A  E+E++AI+ ++   R YL G   + V TD + L F L  R 
Subjt:  MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQN----QRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFV-VRTDQKSLKFLLEQRA

Query:  IGGEYQRWIAKL
           + +RW A++
Subjt:  IGGEYQRWIAKL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCTGTCCCGATGCTAGGTATTCCTGATTTTTCACAAAGTTTTGTGCTGGAAACTGATGCTTCGGGTGTGGGTATTGGGGCTGTCCTAATGCAAAATCAACGACC
AGTGGCCTTTTTCAGTCAAGCTTTACCTATTACCCATAGGTTTAAGGCTGTTTATGAACGGGAGCTTATGGCAATAGTGCTGGCTGTTCAAAAATGGCGACCATATCTAT
TGGGTAAGCCTTTTGTGGTGCGTACAGATCAGAAAAGTTTGAAGTTTCTTCTTGAACAACGGGCTATCGGGGGAGAATATCAGAGATGGATCGCTAAACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTCTGTCCCGATGCTAGGTATTCCTGATTTTTCACAAAGTTTTGTGCTGGAAACTGATGCTTCGGGTGTGGGTATTGGGGCTGTCCTAATGCAAAATCAACGACC
AGTGGCCTTTTTCAGTCAAGCTTTACCTATTACCCATAGGTTTAAGGCTGTTTATGAACGGGAGCTTATGGCAATAGTGCTGGCTGTTCAAAAATGGCGACCATATCTAT
TGGGTAAGCCTTTTGTGGTGCGTACAGATCAGAAAAGTTTGAAGTTTCTTCTTGAACAACGGGCTATCGGGGGAGAATATCAGAGATGGATCGCTAAACTATAG
Protein sequenceShow/hide protein sequence
MISVPMLGIPDFSQSFVLETDASGVGIGAVLMQNQRPVAFFSQALPITHRFKAVYERELMAIVLAVQKWRPYLLGKPFVVRTDQKSLKFLLEQRAIGGEYQRWIAKL