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CSPI04G17880 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G17880
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr4:15316162..15319093
RNA-Seq ExpressionCSPI04G17880
SyntenyCSPI04G17880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151748.1 uncharacterized protein LOC101219754 [Cucumis sativus]1.5e-53100Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        AVNATTEDATSRSSKLMV
Subjt:  AVNATTEDATSRSSKLMV
XP_008444149.1 PREDICTED: uncharacterized protein LOC103487583 [Cucumis melo]4.7e-4789.83Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD ASKFLR L+N  NKNT+INVCLV SFAAL+ARSIKQERQIEALE EKNSLL+SNKALKKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        AVNA TEDATSRSSKLMV
Subjt:  AVNATTEDATSRSSKLMV
XP_022937146.1 uncharacterized protein LOC111443531 [Cucurbita moschata]8.5e-4176.27Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD A+KFLR++ +ATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNK+LKKTMWDWKQQL+++AST+SALVPLARIKAIYGEAP+SPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        A  A T DA S+ SKLMV
Subjt:  AVNATTEDATSRSSKLMV
XP_022976887.1 uncharacterized protein LOC111477117 [Cucurbita maxima]5.9e-4278.81Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD ASKFLR+L NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNKALKKTMWDWKQQL++EAST+SAL+PLARIKAIY EAP+SPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        A  A T DA S+ SKLMV
Subjt:  AVNATTEDATSRSSKLMV
XP_038897052.1 uncharacterized protein LOC120085226 [Benincasa hispida]2.0e-4281.36Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD ASKFLR++ NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK SLLNSNKALKKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
          +  TEDA S+ SKLMV
Subjt:  AVNATTEDATSRSSKLMV
TrEMBL top hitse value%identityAlignment
A0A0A0L380 Uncharacterized protein1.8e-4498.04Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AV
         +
Subjt:  AV
A0A1S3B9R7 uncharacterized protein LOC1034875832.3e-4789.83Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD ASKFLR L+N  NKNT+INVCLV SFAAL+ARSIKQERQIEALE EKNSLL+SNKALKKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        AVNA TEDATSRSSKLMV
Subjt:  AVNATTEDATSRSSKLMV
A0A6J1CGB8 uncharacterized protein LOC1110112723.9e-3976.47Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPI-SPS
        MD A+KFLR+L NA+N  T+INVCLVVSF AL+ARSIKQ+R+IEALE EK+SLLNSNKALKK+MWDWKQQLFAEAS+ESALVPLARIKAIYGE PI SP+
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPI-SPS

Query:  GAVNATTEDATSRSSKLMV
        GA +A TED  S+ SK +V
Subjt:  GAVNATTEDATSRSSKLMV
A0A6J1F9J6 uncharacterized protein LOC1114435314.1e-4176.27Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD A+KFLR++ +ATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNK+LKKTMWDWKQQL+++AST+SALVPLARIKAIYGEAP+SPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        A  A T DA S+ SKLMV
Subjt:  AVNATTEDATSRSSKLMV
A0A6J1IGY3 uncharacterized protein LOC1114771172.9e-4278.81Show/hide
Query:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG
        MD ASKFLR+L NATN NT+INVCLV+SF AL+ARSIKQ+R+IEALE EK+SLLNSNKALKKTMWDWKQQL++EAST+SAL+PLARIKAIY EAP+SPSG
Subjt:  MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG

Query:  AVNATTEDATSRSSKLMV
        A  A T DA S+ SKLMV
Subjt:  AVNATTEDATSRSSKLMV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48200.1 unknown protein2.5e-2247.86Show/hide
Query:  ASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEAST--ESALVPLARIKAIYGEAPISPSGA
        A+K    L+ A N N VIN CL VSF  L  RS KQ++ +EAL  +K SL  SNKA+K TMW+WKQQLFAEA++   +A+VPL+ +KAIYGE   + + +
Subjt:  ASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEAST--ESALVPLARIKAIYGEAPISPSGA

Query:  VNATTEDATSRSSKLMV
         +   ED+   + K+M+
Subjt:  VNATTEDATSRSSKLMV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAACACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAAT
CAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCG
AAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGAGCAGTAAATGCCACAACCGAAGATGCAACT
TCACGAAGCTCCAAACTTATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGATCTGTCTTCCTCTTCCTCCTCAAGAAAAACGACGAACCTGAAAAACCTCCTCAGCTTCAAGGTTCCCGGAGCTTCATTGCAGAATGGATTCGGCCTCCAAATTC
CTTCGTAGTTTAGCTAATGCCACCAACAAAAACACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGA
AGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTT
TAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATG
GTTTAATGTTAGCTTCACTCAAGTTTTCCAGGCACGTATTATCAACTTCAAAGTCAGATATCTTATTCCCTACTCTCACATTTTCAGAAGGAAAAAAGAAAAAAAAAATC
TTTTAGTTTGCTCTAGAATAAAACAACTGATGTAGTCAAAATCTCCATGATGACAAAGCATCATTATACAACCTTTTGCAACTACTTTAAAATAGGTTAAAGTGTGGTTT
TAGTCTCGCACCTTGAAGATTGTTTAGGTTTAGTTTCTTTTTAATCTTCGCCCTTTTATAAATTTTAAAGTTAATTTGTTATTGTTGATAAATACTTGTTATTATCTATT
AGCATTTTTA
Protein sequenceShow/hide protein sequence
MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDAT
SRSSKLMV