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CSPI04G18030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G18030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontransposon Tf2-1 polyprotein isoform X1
Genome locationChr4:15449019..15449465
RNA-Seq ExpressionCSPI04G18030
SyntenyCSPI04G18030
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034981.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.8e-4972.41Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV+AVQRW+PYLLG+KFLVKTDQ+SLKF LEQR+IQPQYQKWI+KLLGY+F+VVYKPGLENKAADALSR PPT+HL  L AP +ID+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        +LQKI  EL E  E    KFS++Q ML YKD+LV+SKTS L+P I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

KAA0062279.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]2.5e-4566.9Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P ++D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L + +E    KF++K  +L YK++LV+SK S LIP+I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

KAA0064689.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]5.5e-4566.9Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP IHLN +  P  +D+  I++EV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L + +E    KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

TYK02195.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-4567.59Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P  +D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L E +E+   KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

TYK23779.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-4567.59Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P  +D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L E +E+   KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

TrEMBL top hitse value%identityAlignment
A0A5A7V9B4 Transposon Tf2-6 polyprotein1.2e-4566.9Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P ++D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L + +E    KF++K  +L YK++LV+SK S LIP+I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

A0A5A7VGU4 Putative retroelement pol polyprotein2.7e-4566.9Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP IHLN +  P  +D+  I++EV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L + +E    KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

A0A5D3BRN6 Transposon Tf2-9 polyprotein1.4e-4972.41Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV+AVQRW+PYLLG+KFLVKTDQ+SLKF LEQR+IQPQYQKWI+KLLGY+F+VVYKPGLENKAADALSR PPT+HL  L AP +ID+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        +LQKI  EL E  E    KFS++Q ML YKD+LV+SKTS L+P I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

A0A5D3BSP2 Ty3/gypsy retrotransposon protein2.0e-4567.59Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P  +D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L E +E+   KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

A0A5D3DKH5 Ty3/gypsy retrotransposon protein2.0e-4567.59Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE
        MAVV++VQRWRPYLLG KF+VKTDQ+SLKF LEQRVIQPQYQKW+SKLLGY+F+VVYKPGLENKAADALSR PP I LN +  P  +D+  I+EEV KDE
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDE

Query:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI
        KL+KI   L E +E+   KF++K  +L YK++LV+SK S LIP I
Subjt:  KLQKIKIELIEGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.0e-0637.5Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM
        +A+V A + +R YLLG+ F + +D Q L +    +    +  +W  KL  + FD+ Y  G EN  ADALSR+
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM

P10394 Retrovirus-related Pol polyprotein from transposon 4126.4e-0436.62Show/hide
Query:  AVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM
        A+  A+  +RPY+ GK F VKTD + L +         +  +   +L  Y F V Y  G +N  ADALSR+
Subjt:  AVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM

P20825 Retrovirus-related Pol polyprotein from transposon 2971.0e-0637.5Show/hide
Query:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM
        +A+V A + +R YLLG++FL+ +D Q L++    +    + ++W  +L  Y F + Y  G EN  ADALSR+
Subjt:  MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRM

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.1e-0739.02Show/hide
Query:  MAVVMAVQRWRPYLLGKKFL-VKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQL
        +A++ ++   R YL G   + V TD Q L F L  R    + ++W +++  Y  +++YKPG  N  ADALSR+PP   LNQL
Subjt:  MAVVMAVQRWRPYLLGKKFL-VKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTAGTCATGGCAGTTCAGAGATGGCGTCCGTATTTGTTAGGCAAGAAGTTCTTAGTGAAAACTGACCAACAATCGCTTAAATTCTTCCTAGAGCAACGGGTCAT
TCAACCGCAGTACCAAAAATGGATCTCTAAACTCCTTGGATATGCATTCGATGTGGTGTATAAACCAGGGCTGGAAAATAAGGCTGCTGATGCATTGTCTAGAATGCCTC
CTACAATTCATTTGAATCAATTGAAAGCCCCAAACATTATTGATGTGGGAGTCATAAGAGAAGAGGTGAATAAAGATGAGAAGCTGCAGAAAATCAAGATAGAGTTGATA
GAAGGGGAAGAAGAATTGAACATTAAGTTTTCAATGAAACAAAGGATGCTGATGTATAAGGACCAATTAGTATTATCTAAAACGTCCAAATTGATTCCTATGATCTGCTT
ACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTAGTCATGGCAGTTCAGAGATGGCGTCCGTATTTGTTAGGCAAGAAGTTCTTAGTGAAAACTGACCAACAATCGCTTAAATTCTTCCTAGAGCAACGGGTCAT
TCAACCGCAGTACCAAAAATGGATCTCTAAACTCCTTGGATATGCATTCGATGTGGTGTATAAACCAGGGCTGGAAAATAAGGCTGCTGATGCATTGTCTAGAATGCCTC
CTACAATTCATTTGAATCAATTGAAAGCCCCAAACATTATTGATGTGGGAGTCATAAGAGAAGAGGTGAATAAAGATGAGAAGCTGCAGAAAATCAAGATAGAGTTGATA
GAAGGGGAAGAAGAATTGAACATTAAGTTTTCAATGAAACAAAGGATGCTGATGTATAAGGACCAATTAGTATTATCTAAAACGTCCAAATTGATTCCTATGATCTGCTT
ACCATGA
Protein sequenceShow/hide protein sequence
MAVVMAVQRWRPYLLGKKFLVKTDQQSLKFFLEQRVIQPQYQKWISKLLGYAFDVVYKPGLENKAADALSRMPPTIHLNQLKAPNIIDVGVIREEVNKDEKLQKIKIELI
EGEEELNIKFSMKQRMLMYKDQLVLSKTSKLIPMICLP