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CSPI04G18210 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G18210
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionrRNA adenine N(6)-methyltransferase
Genome locationChr4:15610799..15611086
RNA-Seq ExpressionCSPI04G18210
SyntenyCSPI04G18210
Gene Ontology termsGO:0001708 - cell fate specification (biological process)
GO:0031167 - rRNA methylation (biological process)
GO:0051301 - cell division (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005759 - mitochondrial matrix (cellular component)
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001737 - Ribosomal RNA adenine methyltransferase KsgA/Erm
IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649634.1 hypothetical protein Csa_012427 [Cucumis sativus]1.7e-3997.7Show/hide
Query:  WQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
        W+EAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV+LEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
Subjt:  WQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
KAF2325087.1 hypothetical protein GH714_022692 [Hevea brasiliensis]8.2e-1052.87Show/hide
Query:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K K+ +Q   R   +H++ G      K     + P L+ T  Q SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
KAF8396245.1 hypothetical protein HHK36_017860 [Tetracentron sinense]6.3e-1054.12Show/hide
Query:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K R++   R   +HF+ G      K     + P L+ T  Q SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
OVA07205.1 Ribosomal RNA adenine methylase transferase [Macleaya cordata]3.2e-1464.1Show/hide
Query:  RMQHHFKEGFHSINPKASIFSRIPCLLTTF---QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        ++Q   KEG+HS NPK +I+SR   LLT     Q SG KSTD+ILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  RMQHHFKEGFHSINPKASIFSRIPCLLTTF---QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
XP_021609877.1 ribosomal RNA small subunit methyltransferase [Manihot esculenta]8.2e-1052.87Show/hide
Query:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K K+ +Q   R   +H++ G      K     + P L+ T  Q SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
TrEMBL top hitse value%identityAlignment
A0A0A0KYM8 rRNA adenine N(6)-methyltransferase9.4e-4498.94Show/hide
Query:  MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLE
        MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDV+LEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLE
Subjt:  MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLE
A0A200Q9S0 rRNA adenine N(6)-methyltransferase1.6e-1464.1Show/hide
Query:  RMQHHFKEGFHSINPKASIFSRIPCLLTTF---QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        ++Q   KEG+HS NPK +I+SR   LLT     Q SG KSTD+ILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  RMQHHFKEGFHSINPKASIFSRIPCLLTTF---QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
A0A2C9WQP3 rRNA adenine N(6)-methyltransferase4.0e-1052.87Show/hide
Query:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K K+ +Q   R   +H++ G      K     + P L+ T  Q SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
A0A6A6NIN1 rRNA adenine N(6)-methyltransferase4.0e-1052.87Show/hide
Query:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K K+ +Q   R   +H++ G      K     + P L+ T  Q SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
B9ST15 rRNA adenine N(6)-methyltransferase6.8e-1051.72Show/hide
Query:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K K+ +  Q R   +H++ G      K     + P L+ T  + SG KSTDVILEIG GTGNLTKKLLE GKMVIAV +D + VLEL
Subjt:  KWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
SwissProt top hitse value%identityAlignment
O22268 Ribosomal RNA small subunit methyltransferase1.3e-1048.24Show/hide
Query:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K + +   R   +H++ G      K     + P L+ +  Q +G KSTDVILEIG GTGNLTKKLLE GK VIAV +D + VLEL
Subjt:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
Q09522 Probable dimethyladenosine transferase6.3e-0551.11Show/hide
Query:  QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        + S  K+TD +LE+G GTGNLT K+LE  K VIA  ID + + E+
Subjt:  QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
Q54QK7 Probable dimethyladenosine transferase3.7e-0560.47Show/hide
Query:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        S  KSTD +LEIG GTGNLT KLLE  K VIA+ +D +   EL
Subjt:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
Q9UNQ2 Probable dimethyladenosine transferase3.1e-0455Show/hide
Query:  KSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        + TDV+LE+G GTGN+T KLLE  K V+A  +D + V EL
Subjt:  KSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
Q9VAQ5 Probable dimethyladenosine transferase4.8e-0547.17Show/hide
Query:  PCLLTT-FQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        P ++TT  + +  ++TDV+LEIG GTGN+T ++LE  K VIA  ID +   EL
Subjt:  PCLLTT-FQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
Arabidopsis top hitse value%identityAlignment
AT2G47420.1 Ribosomal RNA adenine dimethylase family protein9.4e-1248.24Show/hide
Query:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
        K + +   R   +H++ G      K     + P L+ +  Q +G KSTDVILEIG GTGNLTKKLLE GK VIAV +D + VLEL
Subjt:  KRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTF-QMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL
AT5G66360.1 Ribosomal RNA adenine dimethylase family protein2.9e-0555Show/hide
Query:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
        S  + TD +LEIG GTGNLT KLLE  + V+AV +D + V
Subjt:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
AT5G66360.2 Ribosomal RNA adenine dimethylase family protein2.9e-0555Show/hide
Query:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV
        S  + TD +LEIG GTGNLT KLLE  + V+AV +D + V
Subjt:  SGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAACAACAATGGCAGGAGGCAAAATGGAAAAGGAGAAGGCAAATGCAGGGGCGAAGAATGCAACACCATTTCAAGGAGGGATTTCATTCCATAAATCCAAAGGC
GAGCATATTCTCAAGAATCCCTTGCTTGTTGACTACATTTCAAATGTCTGGAACTAAGAGCACCGATGTGATACTCGAGATCGGTCTCGGTACTGGTAATCTCACAAAAA
AGCTTTTAGAATGTGGCAAGATGGTTATTGCTGTCCGAATCGATCTTCAGACGGTTCTTGAGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAACAACAATGGCAGGAGGCAAAATGGAAAAGGAGAAGGCAAATGCAGGGGCGAAGAATGCAACACCATTTCAAGGAGGGATTTCATTCCATAAATCCAAAGGC
GAGCATATTCTCAAGAATCCCTTGCTTGTTGACTACATTTCAAATGTCTGGAACTAAGAGCACCGATGTGATACTCGAGATCGGTCTCGGTACTGGTAATCTCACAAAAA
AGCTTTTAGAATGTGGCAAGATGGTTATTGCTGTCCGAATCGATCTTCAGACGGTTCTTGAGTTGTAG
Protein sequenceShow/hide protein sequence
MFQQQWQEAKWKRRRQMQGRRMQHHFKEGFHSINPKASIFSRIPCLLTTFQMSGTKSTDVILEIGLGTGNLTKKLLECGKMVIAVRIDLQTVLEL