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CSPI04G18380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G18380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionribosomal protein-related
Genome locationChr4:15820475..15821161
RNA-Seq ExpressionCSPI04G18380
SyntenyCSPI04G18380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649640.1 hypothetical protein Csa_012725 [Cucumis sativus]4.6e-52100Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALG
        KPGYAETFALG
Subjt:  KPGYAETFALG

XP_011653828.1 uncharacterized protein LOC101209567 [Cucumis sativus]3.6e-73100Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
Subjt:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

XP_016899843.1 PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo]8.0e-6591.1Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQNALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KPGYAETFALGLASGSVLNG GTVMPHVF ALTNIWSSVTNLTKHS
Subjt:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

XP_022980748.1 uncharacterized protein LOC111480022 [Cucurbita maxima]4.6e-5275.17Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK
        M DS SPA+ NSLP+  +  +P   S    RK PSPQEL+SHYESQGLTSHDASIKVI+DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLK
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK

Query:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        LDSKPGYA+TFALGLASGSVLNG G VMPHVF AL NIWSSV+  TKHS
Subjt:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

XP_038893730.1 uncharacterized protein LOC120082569 [Benincasa hispida]5.8e-5579.19Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK
        M +S S A PNSLP+     +P   S    RKPPSPQELISHYESQGLTSHDASIKVI+DLQNALFRIISSGRG KDK L+ETSRK+DATN+RLA+LDLK
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK

Query:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        LDSKPGYAE+FALGLASGSVL+G GTVMPHVF ALTNIWSSV+NLTKHS
Subjt:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

TrEMBL top hitse value%identityAlignment
A0A0A0L3B6 Uncharacterized protein1.7e-73100Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
Subjt:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

A0A1S4DV46 uncharacterized protein LOC1034875373.9e-6591.1Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQNALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KPGYAETFALGLASGSVLNG GTVMPHVF ALTNIWSSVTNLTKHS
Subjt:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

A0A5A7VAF7 Putative ribosomal-like protein3.9e-6591.1Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS
        MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQNALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDS
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDS

Query:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KPGYAETFALGLASGSVLNG GTVMPHVF ALTNIWSSVTNLTKHS
Subjt:  KPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

A0A6J1GTX5 uncharacterized protein LOC1114575044.9e-5274Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRS----VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDL
        M DS SPA+ NSLP+  +  +P   S     RK PSPQEL+SHYESQGLTSHDASIKVI+DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDL
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRS----VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDL

Query:  KLDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        KLDSKPGYA+TFALGLASGSVLNG G VMPHVF A+ NIWSSV+  TKHS
Subjt:  KLDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

A0A6J1J075 uncharacterized protein LOC1114800222.2e-5275.17Show/hide
Query:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK
        M DS SPA+ NSLP+  +  +P   S    RK PSPQEL+SHYESQGLTSHDASIKVI+DLQNAL RIISSGRG KDK L++TSRK+DATN+RLA+LDLK
Subjt:  MEDSGSPASPNSLPKGQDNISPTVRS---VRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLK

Query:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS
        LDSKPGYA+TFALGLASGSVLNG G VMPHVF AL NIWSSV+  TKHS
Subjt:  LDSKPGYAETFALGLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G16790.1 ribosomal protein-related2.5e-3253.73Show/hide
Query:  PASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDK-RLLETSRKLDATNSRLAVLDLKLDSKPGYA
        PA+PN+    ++  S   +  +K P+P ELISHY+ +GL   +ASIKVI+DLQNAL R++SS R    K +L+  +RK+DA N RLAV+D KL++KPGY 
Subjt:  PASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDK-RLLETSRKLDATNSRLAVLDLKLDSKPGYA

Query:  ETFALGLASGSVLNGFGTVMPHVFRALTNIWSSV
        ETFALGLASG+ LNG   V PHV R +  IWS+V
Subjt:  ETFALGLASGSVLNGFGTVMPHVFRALTNIWSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATTCAGGTTCACCAGCGTCTCCAAATTCTCTCCCAAAAGGTCAAGACAACATTTCTCCAACAGTAAGAAGTGTGAGAAAGCCTCCTTCCCCACAGGAACTCAT
ATCCCACTACGAATCCCAAGGCCTTACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGG
ACAAGCGTCTGCTCGAGACCTCCAGGAAACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTA
GGTTTGGCTTCTGGGTCTGTTTTGAATGGGTTTGGGACTGTGATGCCCCATGTTTTTAGGGCTCTCACCAATATTTGGAGTTCTGTTACTAACCTCACGAAGCATTCTTG
A
mRNA sequenceShow/hide mRNA sequence
TTTTCGTCGGGGATGTTTCCTCGTTTATCTGTTGTCCTACCTTTTTTCCCCATTAGCCATTATCTCAAAATTTGGGTGCAGCAATGGAAGATTCAGGTTCACCAGCGTCT
CCAAATTCTCTCCCAAAAGGTCAAGACAACATTTCTCCAACAGTAAGAAGTGTGAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCTTAC
TTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAGAATCATCTCCTCCGGCAGAGGCAACAAGGACAAGCGTCTGCTCGAGACCTCCAGGA
AACTCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTGAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAAT
GGGTTTGGGACTGTGATGCCCCATGTTTTTAGGGCTCTCACCAATATTTGGAGTTCTGTTACTAACCTCACGAAGCATTCTTGAATTTTGATTGATACAAAACTAGTTTT
CGCTTTTGTGGTTCTGTTTTTCTATTTAGTTCGATCAGGTGGTTGATAGTTGTTGTTGTTGGTTAGATACTCGGGAAATCCTAATATTTGAGTTTAAGCTATGCCTTTTC
TTTTCCCTCTTCTTGGATTGGTCTTTC
Protein sequenceShow/hide protein sequence
MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQNALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFAL
GLASGSVLNGFGTVMPHVFRALTNIWSSVTNLTKHS