; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G18400 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G18400
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationChr4:15830748..15831410
RNA-Seq ExpressionCSPI04G18400
SyntenyCSPI04G18400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581755.1 hypothetical protein SDJN03_21757, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4274.6Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGE+  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ VEEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ 
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQGG
        + RPYWGFVDMVTTNVQD+K ALQ G
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQGG

XP_008444096.1 PREDICTED: uncharacterized protein LOC103487535 [Cucumis melo]3.4e-5992.8Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTVEEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSH
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQG
        RSRPYWGFVDMVTTNVQ+IK ALQG
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQG

XP_022956009.1 uncharacterized protein LOC111457833 isoform X1 [Cucurbita moschata]4.5e-4375.4Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEE  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ VEEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ 
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQGG
        + RPYWGFVDMVTTNVQD+K ALQ G
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQGG

XP_031740485.1 uncharacterized protein LOC101213393 [Cucumis sativus]9.3e-6599.2Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVH PDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQG
        RSRPYWGFVDMVTTNVQDIKTALQG
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQG

XP_038895444.1 uncharacterized protein LOC120083676 [Benincasa hispida]1.3e-4778.2Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYG-------GQSTHTQEVNIEEQPLLRFIIMGRK
        MGEG+E  KTKAE+  VEIQERGEI+F YRPKV KQEVHSPDEVQRLYIILRP+SGEK VEEKQ +         GQ THTQEVNIE+QPLLRFIIMGRK
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYG-------GQSTHTQEVNIEEQPLLRFIIMGRK

Query:  SLPHPSHRSRPYWGFVDMVTTNVQDIKTALQGG
        SLPHP+ R+RPYWGFVDMVTT+VQDIK ALQGG
Subjt:  SLPHPSHRSRPYWGFVDMVTTNVQDIKTALQGG

TrEMBL top hitse value%identityAlignment
A0A0A0KYP1 Uncharacterized protein9.7e-6899.22Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVH PDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQGGTSH
        RSRPYWGFVDMVTTNVQDIKTALQGGTSH
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQGGTSH

A0A1S3B9M2 uncharacterized protein LOC1034875351.7e-5992.8Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTVEEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSH
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQG
        RSRPYWGFVDMVTTNVQ+IK ALQG
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQG

A0A200R9B0 Uncharacterized protein3.5e-4163.89Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQ-----------------STHTQEVNIEEQP
        MG+G EE KT+ E + VEIQERGEIFF YRPKV K+E HSPD+VQRLYI+LRP+SGE  VEEKQ S  G+                 +   +EVNIE++P
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQ-----------------STHTQEVNIEEQP

Query:  LLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQGGT
        LLRFI+MGRKSLP PS RSRPYWGFV+MVTTN+ DIKTAL+GGT
Subjt:  LLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQGGT

A0A5D3BUL8 Uncharacterized protein1.7e-5992.8Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTVEEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSH
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQG
        RSRPYWGFVDMVTTNVQ+IK ALQG
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQG

A0A6J1GXU8 uncharacterized protein LOC111457833 isoform X12.2e-4375.4Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH
        MGEGEE  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ VEEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ 
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSH

Query:  RSRPYWGFVDMVTTNVQDIKTALQGG
        + RPYWGFVDMVTTNVQD+K ALQ G
Subjt:  RSRPYWGFVDMVTTNVQDIKTALQGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G16770.1 unknown protein3.3e-3652.67Show/hide
Query:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQ------------------------CSYGGQSTH-TQ
        MG+G +E+KT+ +  +VEIQERGEIFF YRPKV K+E HS D+VQRLYI++RP+SGE   EEKQ                            G+  H  +
Subjt:  MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQ------------------------CSYGGQSTH-TQ

Query:  EVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQG
        +VNIE+Q LLRFI+MG+KSLP PS +S+P+WGFV+MVTTNV+D+K AL+G
Subjt:  EVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQG

AT1G16770.2 unknown protein4.1e-1846Show/hide
Query:  LRPQSGEKTVEEKQ------------------------CSYGGQSTH-TQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQG
        +RP+SGE   EEKQ                            G+  H  ++VNIE+Q LLRFI+MG+KSLP PS +S+P+WGFV+MVTTNV+D+K AL+G
Subjt:  LRPQSGEKTVEEKQ------------------------CSYGGQSTH-TQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGGGGGAAGAAGAACTGAAGACGAAAGCTGAAAATCATGAAGTTGAAATTCAGGAGAGAGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGGAAAACAAGA
AGTGCATAGCCCTGATGAGGTGCAACGCTTGTACATTATTCTTCGGCCACAGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAGCTATGGTGGACAGAGTACCCACA
CCCAGGAAGTTAACATCGAAGAGCAACCCCTTTTACGGTTCATTATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCTTACTGGGGATTTGTAGAT
ATGGTAACAACCAACGTTCAAGATATCAAGACTGCGCTTCAAGGAGGTACATCCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGGGGGAAGAAGAACTGAAGACGAAAGCTGAAAATCATGAAGTTGAAATTCAGGAGAGAGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGGAAAACAAGA
AGTGCATAGCCCTGATGAGGTGCAACGCTTGTACATTATTCTTCGGCCACAGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAGCTATGGTGGACAGAGTACCCACA
CCCAGGAAGTTAACATCGAAGAGCAACCCCTTTTACGGTTCATTATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCTTACTGGGGATTTGTAGAT
ATGGTAACAACCAACGTTCAAGATATCAAGACTGCGCTTCAAGGAGGTACATCCCACTGA
Protein sequenceShow/hide protein sequence
MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVD
MVTTNVQDIKTALQGGTSH