CuGenDBv2

Gene ID	CSPI04G18550
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ribosomal RNA-processing protein 17
Genome location	Chr4:16048251..16054657
RNA-Seq Expression	CSPI04G18550
Synteny	CSPI04G18550
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

7.6e-87

94.39

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

3.1e-72

80.61

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTA  T QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

7.7e-71

77.5

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LP+TKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]

2.6e-95

100

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

2.3e-75

81.5

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ+EEA+RR RIEARKKR+LEKDLVL+GGVLPADR VD++ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D    + +EEE+PLAP SE TTYD+GN+KVTV TSEVSRE+EIDPIDKPQTA  T QL  KDKKHNLP+TKKK FKKVAKQR RPK RSKRDK+KG+KKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

1.3e-95

100

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

3.7e-87

94.39

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQLLGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

1.5e-72

80.61

Show/hide

Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTA  T QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

4.9e-71

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE T YD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

3.1e-70

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV RE+EIDPIDKPQ +  T+QLL KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.6e-34

54.01

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Query:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE
        EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQ+EEA RR RIEARK RKLE+ +V   G    D   +D+ D + +E
Subjt:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE

Query:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQT-ATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK
        E EP A  S  T YD G +KVTVTTSE+SRE+E +PI K +T +T +        K  +P+ K K  K+ +++R   K   KRDKKK
Subjt:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQT-ATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
GGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAA
AAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTACCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTA
GCACCACTTTCTGAGGCAACAACGTATGACAACGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGAC
AGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAGCTTC
GAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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GTTAAAATAGGATTCACATTTATTTCATCAAAACCAAAAAAAAGAAAAGAAAAAAAGACCTAAACAAGCCTTGTAGCGCCCGAATTTGGAGCTAAAAACGCAAGGCGTGG
GTCTTCTTTGTAGAGTGCGGAACTCACGGCGTTGTGTCTCAGTTTTGGAGGTTAGAGCGGCGGGGTCTTTTGCTCTCTGTTCAACGGCGTCGTAGAAGTCGAGTTTGTTT
ATTCTCTTTCAAGAGAGTTTATTCCCATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAA
GCTCTTTCTGTCTCTTTCAATGAGAAGGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTAT
GCGGCGGATGCGCATCGAAGCACGAAAAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTACCAGCTGACCGGGCGGTTGATGACCAGAATGATGATC
AAGGGAATGAGGAAGAGGAACCATTAGCACCACTTTCTGAGGCAACAACGTATGACAACGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAA
ATCGATCCAATTGACAAGCCACAGACAGCAACAGTAACAGCTCAGTTGCTTGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGC
AAAACAGAGGGGAAGGCCAAAGCTTCGAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGATAATAGCTTCTTACCTACCTCTGTCCTAAATGTTCAATGCGA
TATGATTTATTTGTTTTATCATGAGAATATGTAGTGATCTTGAGCATTGGGTGTCTTTGAGGGTTTTGTATTATTACATTATAAAAGCTTTCCCGTTTTGCAAACTGACT
GCAATTTTTCTTTTTATGTGCAGCTCGATTTGTTTTCATTCAGCATTCCTAGAAAGAAAAAAATCATCCAAGTAAAGAAAAATTATCGTATTGCTTTACAAGTATCATGT
TTGATAATTAATATAT

Protein sequence

Show/hide protein sequence

MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPL
APLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQLLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

CSPI04G18550 (gene) of Cucumber (PI 183967) v1 genome