; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G18780 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G18780
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationChr4:16312687..16314626
RNA-Seq ExpressionCSPI04G18780
SyntenyCSPI04G18780
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]2.1e-7199.35Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_008455762.1 PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]7.1e-6494.12Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSSEVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]9.3e-5683.33Show/hide
Query:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP
        +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS+E QP AEAKKEDVP
Subjt:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]7.9e-5581.65Show/hide
Query:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED
        +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S  VKAASE DATGETDS+E +P+AEAKKED
Subjt:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]4.5e-5886.71Show/hide
Query:  MASFLLSSNPLSTSFH---FS--TSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED
        MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIGFQPKHFNGVRL   SFVEN ASL+VKAASE DA G+TDSSE QP AEAKKED
Subjt:  MASFLLSSNPLSTSFH---FS--TSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein1.0e-7199.35Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSS+VQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic3.4e-6494.12Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FVENTASLVVKAASETDATGE DSSEVQPAAEAKKEDVPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic4.5e-5683.33Show/hide
Query:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP
        +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS+E QP AEAKKEDVP
Subjt:  SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.9e-5481.01Show/hide
Query:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED
        +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S +VKAASE DATGETDS+E +P AEAKKED
Subjt:  SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKED

Query:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like3.2e-5480.77Show/hide
Query:  SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP
        +FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN SFVENT S +VKAASE D TGETDS+E +P+AEAKKEDVP
Subjt:  SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic1.8e-1444.29Show/hide
Query:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQ
        F+T+P   S S FP  +A P S +    IG       G R+      +   + +  A++   A         +  ++ + + V VDKLPLESKL+ER E+
Subjt:  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQ

Query:  KARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
          +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  KARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic3.7e-1554.21Show/hide
Query:  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSK
        G RL  H  V      T   +V AA+E  A  + D S+V+ A      ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSK
Subjt:  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSK

Query:  MKKLKNV
        MKKLKNV
Subjt:  MKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.8e-1446.15Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S   +   +VVKAA+      E +S E      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.3e-1546.15Show/hide
Query:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK
        MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S   +   +VVKAA+      E +S E      A    VPVDK
Subjt:  MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTT
GCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGA
CTGATGCTACGGGAGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGG
CTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGAT
GAAGAAGTTGAAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
GTTTTTGGACAAGAAATAAAGTAAAATTAAATTCTGAATGTATATTCAAAATGTTATACAAAAGCTTATCCGAACGTAAGCGAGGGGCTCCCAGTTCACACCATGGCTTC
CTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGA
AGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCT
ACGGGAGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACA
GAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGT
TGAAGAACGTTTGATAATCTTGAGCTCCTTGAATTCAATTCTTGCAGTTTTCAGTTCTAGAGGTGCCATTTCTCCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATA
CTTTCAAGGAAATGTACTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTCTTCTTAGTTTTGAACGACTAAATTGTGAGTTGAAAGATGA
CTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTTATTGGTAATCTTGCTAAAAAAAACCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTAAGATGAAATT
GCACGTCGAGATGAATCCCCCCCAGGGAGGAGTTTGAGCTTGACG
Protein sequenceShow/hide protein sequence
MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER
LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV