CuGenDBv2

Gene ID	CSPI04G18930
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribonuclease
Genome location	Chr4:16472524..16472914
RNA-Seq Expression	CSPI04G18930
Synteny	CSPI04G18930
Gene Ontology terms	GO:0006402 - mRNA catabolic process (biological process) GO:0031047 - gene silencing by RNA (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0016442 - RISC complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0004518 - nuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649665.1 hypothetical protein Csa_012973 [Cucumis sativus]

1.6e-46

97.12

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Query:  MCSSFFFTIVLSFESICYVEGENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQF
        M SSFFFTIVLSFESICYVEGENYVEGEEVSNRATVESKQKEV KVIVTEVLDGDKFYVQTIP+QTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQF
Subjt:  MCSSFFFTIVLSFESICYVEGENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQF

Query:  SSDN
        SSDN
Subjt:  SSDN

XP_004138013.1 ribonuclease TUDOR 1 [Cucumis sativus]

1.0e-26

83.13

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  F+PKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

XP_008464356.1 PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo]

4.7e-27

84.34

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

XP_022921726.1 ribonuclease TUDOR 1-like [Cucurbita moschata]

1.5e-25

80.72

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEV N A VESKQKEV KVIVTEVL G KFYVQTI +Q  TSLQ+QL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

XP_038878676.1 ribonuclease TUDOR 1-like [Benincasa hispida]

4.7e-27

84.34

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRJ8 Ribonuclease

5.1e-27

83.13

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  F+PKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

A0A1S3CL97 Ribonuclease

2.3e-27

84.34

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

A0A5D3BH85 Ribonuclease

2.3e-27

84.34

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

A0A6J1JGV6 Ribonuclease

7.3e-26

80.72

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEV N A VESKQKEV KVIVTEVL G KFYVQTI +Q  TSLQ+QL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

E5GBL0 Ribonuclease

2.3e-27

84.34

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Query:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVSN A VESKQKEV KVIVTEVL G KFYVQTI +Q ATSLQQQL  LNLQEVPLI  FSPKKGDIVLAQFS+DN
Subjt:  ENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

SwissProt top hits

e value

%identity

Alignment

Q8VZG7 Ribonuclease TUDOR 1

1.5e-20

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Query:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVS  N  TVE++QKE  KV+VTEVL G +FYVQ+  +Q   S+Q QL +L++++ P+I  F+PK+GDIVLAQFS DN
Subjt:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

Q9FLT0 Ribonuclease TUDOR 2

3.1e-21

61.9

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Query:  ENYVEGEEVSNRAT-VESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEV N ++ VE++QKE  KV+VTEVL G +FYVQT+ +Q   S+Q QL  L+L++ P+I  F+PKKGDIVLAQFS DN
Subjt:  ENYVEGEEVSNRAT-VESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

Arabidopsis top hits

e value

%identity

Alignment

AT5G07350.1 TUDOR-SN protein 1

1.1e-21

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Query:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVS  N  TVE++QKE  KV+VTEVL G +FYVQ+  +Q   S+Q QL +L++++ P+I  F+PK+GDIVLAQFS DN
Subjt:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

AT5G07350.2 TUDOR-SN protein 1

1.1e-21

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Query:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEVS  N  TVE++QKE  KV+VTEVL G +FYVQ+  +Q   S+Q QL +L++++ P+I  F+PK+GDIVLAQFS DN
Subjt:  ENYVEGEEVS--NRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

AT5G61780.1 TUDOR-SN protein 2

2.2e-22

61.9

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Query:  ENYVEGEEVSNRAT-VESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN
        ENYVEGEEV N ++ VE++QKE  KV+VTEVL G +FYVQT+ +Q   S+Q QL  L+L++ P+I  F+PKKGDIVLAQFS DN
Subjt:  ENYVEGEEVSNRAT-VESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

Sequences

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CDS sequence

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ATGTGTTCTTCTTTCTTTTTTACCATTGTTTTATCTTTTGAGTCCATTTGTTATGTTGAAGGGGAGAACTATGTTGAAGGGGAGGAAGTGTCCAATCGTGCAACTGTTGA
AAGCAAACAGAAAGAAGTGTTCAAGGTAATTGTCACCGAGGTTTTGGATGGTGACAAGTTTTATGTTCAGACAATTCCGAACCAAACAGCCACTTCTCTACAGCAGCAAC
TAGAGACTTTGAATCTTCAAGAAGTCCCTTTAATTTGTGGTTTTAGTCCTAAAAAAGGTGATATCGTCCTAGCTCAATTTAGTTCAGACAAC

mRNA sequence

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Protein sequence

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MCSSFFFTIVLSFESICYVEGENYVEGEEVSNRATVESKQKEVFKVIVTEVLDGDKFYVQTIPNQTATSLQQQLETLNLQEVPLICGFSPKKGDIVLAQFSSDN

CSPI04G18930 (gene) of Cucumber (PI 183967) v1 genome