; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G19120 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19120
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr4:16747645..16748037
RNA-Seq ExpressionCSPI04G19120
SyntenyCSPI04G19120
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.7e-2558.02Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                          EKMSDENQA+ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

KAA0060177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-2557.25Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLE+LYLT                                         +EKMSDENQ +ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKATIKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.7e-2559.06Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-------------------------------------NEKMSDENQALILLNSLPQTYREVKA
        M YS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                      EKMSDENQA+ILLNSLP+TYREVKA
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-------------------------------------NEKMSDENQALILLNSLPQTYREVKA

Query:  TIKYSRNSLTMSVALDALKTRKLEIKK
         IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  TIKYSRNSLTMSVALDALKTRKLEIKK

TYK05711.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.5e-2556.49Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATTIGELWKKLESLYLT                                          EKMSDENQ +ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY ++SLTM++ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.7e-2558.02Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                          EKMSDENQA+ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

TrEMBL top hitse value%identityAlignment
A0A5A7UB25 Putative gag-pol polyprotein8.3e-2658.02Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                          EKMSDENQA+ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

A0A5A7V025 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-2557.25Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLE+LYLT                                         +EKMSDENQ +ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKATIKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass8.3e-2659.06Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-------------------------------------NEKMSDENQALILLNSLPQTYREVKA
        M YS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                      EKMSDENQA+ILLNSLP+TYREVKA
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-------------------------------------NEKMSDENQALILLNSLPQTYREVKA

Query:  TIKYSRNSLTMSVALDALKTRKLEIKK
         IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  TIKYSRNSLTMSVALDALKTRKLEIKK

A0A5D3C1A2 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-2556.49Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATTIGELWKKLESLYLT                                          EKMSDENQ +ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY ++SLTM++ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

A0A5D3DNU1 Putative gag-pol polyprotein8.3e-2658.02Show/hide
Query:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR
        MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                                          EKMSDENQA+ILLNSLP+TYR
Subjt:  MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT-----------------------------------------NEKMSDENQALILLNSLPQTYR

Query:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK
        EVKA IKY R+SLTMS+ LDALKTR LEIKK
Subjt:  EVKATIKYSRNSLTMSVALDALKTRKLEIKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTATTCAATGATCCTTATGTATCTGTCTGATGAAGTTCTTAAGCCTGTAGATGAGGCTACTACTATAGGAGAGTTGTGGAAGAAGCTAGAAAGTCTTTACTTGAC
AAATGAGAAGATGTCAGATGAGAATCAAGCCTTGATTCTTTTAAATTCATTACCTCAAACATATCGAGAGGTTAAGGCAACTATTAAATATAGTCGGAATTCATTGACCA
TGAGTGTAGCGTTGGATGCCTTAAAGACTAGAAAACTTGAAATTAAAAAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTATTCAATGATCCTTATGTATCTGTCTGATGAAGTTCTTAAGCCTGTAGATGAGGCTACTACTATAGGAGAGTTGTGGAAGAAGCTAGAAAGTCTTTACTTGAC
AAATGAGAAGATGTCAGATGAGAATCAAGCCTTGATTCTTTTAAATTCATTACCTCAAACATATCGAGAGGTTAAGGCAACTATTAAATATAGTCGGAATTCATTGACCA
TGAGTGTAGCGTTGGATGCCTTAAAGACTAGAAAACTTGAAATTAAAAAA
Protein sequenceShow/hide protein sequence
MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLTNEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALDALKTRKLEIKK