CuGenDBv2

Gene ID	CSPI04G19260
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	sigma factor binding protein 2, chloroplastic
Genome location	Chr4:16915309..16916079
RNA-Seq Expression	CSPI04G19260
Synteny	CSPI04G19260
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

2.6e-72

87.2

Show/hide

Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

8.7e-84

99.39

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

5.8e-72

87.2

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]

2.6e-72

87.2

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

XP_011653858.1 sigma factor binding protein 2, chloroplastic [Cucumis sativus]

8.7e-84

99.39

Show/hide

Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

4.2e-84

99.39

Show/hide

Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGA+NLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

A0A1S3C276 sigma factor binding protein 2, chloroplastic

1.3e-72

87.2

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

A0A5A7SJV9 Sigma factor binding protein 2

1.3e-72

87.2

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP P+AAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

A0A5D3BYM2 Sigma factor binding protein 2

2.8e-72

87.2

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Query:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED
        MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+D
Subjt:  MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGED

Query:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR
        DGASNLIVNSNN SLVD+VPAEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Subjt:  DGASNLIVNSNNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

2.9e-45

66.46

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Query:  AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDG
        AGT TG+ HR LD V+RRKPTKKTKQP     KPIKVVYISNPMKVQ SASGFMALVQ+LTGQDADFPDPS FPP+AV D AA  D ++NT +       
Subjt:  AGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDG

Query:  ASNLIVNSNNSSLVDEVPAEDD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR
            ++N+NN SL  E+P EDD  LGSFYDD DDLIFP PVIGN+  LLPA  A AV+YES AR
Subjt:  ASNLIVNSNNSSLVDEVPAEDD-ILGSFYDDFDDLIFPSPVIGNFSGLLPAPVA-AVVYESNAR

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

3.7e-05

32.48

Show/hide

Query:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGASNLIVNSNNSSLVDEVPAEDD
        K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS     A                       ++    S ++  P + +
Subjt:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGASNLIVNSNNSSLVDEVPAEDD

Query:  ILGSFYDDFDDLIFPSP
        + G +Y   D+ +F +P
Subjt:  ILGSFYDDFDDLIFPSP

Q9LDH1 Sigma factor binding protein 1, chloroplastic

1.1e-07

52.63

Show/hide

Query:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS
        T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTGQDA D  P+P   P S
Subjt:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

2.7e-06

32.48

Show/hide

Query:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGASNLIVNSNNSSLVDEVPAEDD
        K K+      KPIKV YISNPM+V+T  S F  LVQELTGQDA     +  PPS     A                       ++    S ++  P + +
Subjt:  KTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGASNLIVNSNNSSLVDEVPAEDD

Query:  ILGSFYDDFDDLIFPSP
        + G +Y   D+ +F +P
Subjt:  ILGSFYDDFDDLIFPSP

AT3G56710.1 sigma factor binding protein 1

7.5e-09

52.63

Show/hide

Query:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS
        T T  D +    V R+ P +K K       KPIKV YISNPM+VQT AS F  LVQELTGQDA D  P+P   P S
Subjt:  TATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDA-DF-PDPSKFPPS

Sequences

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CDS sequence

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ATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCGTAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCAT
CAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTA
AATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACGATATCCAGTGGCGGTGAGGACGACGGTGCTAGTAATCTTATTGTGAATAGT
AACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAACTTCTC
GGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGTGA

mRNA sequence

Show/hide mRNA sequence

TAAATTTCATCAAAATATCTTGCTTCTCATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATATTTT
CCCTCACTCTCTCTCCTTTTTCCCCTAAAAACCCTTTTTTCCCCTTCCGAAATGGACGCTGGCACCGCCACCGGAAGCGACCACCGAACTCTCGACGCCGTTTACCGGCG
TAAACCCACCAAGAAAACAAAACAACCCAAGAACAGATTGAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGGATTCATGG
CTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAATACG
ATATCCAGTGGCGGTGAGGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACTCTTCACTTGTTGACGAGGTGCCGGCGGAGGACGACATTCTTGGTAGCTTTTA
TGACGACTTTGACGACTTGATTTTTCCTTCTCCGGTAATTGGAAACTTCTCGGGGTTGCTTCCGGCTCCCGTGGCGGCGGTTGTCTATGAATCTAATGCAAGGTGAAAAT
ATTTATTGATATTATAATGTGTGAAAGATCCTTGATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCCTTTTTAATGAATATATATATAATTGTCTATTAATTGGGGA
G

Protein sequence

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MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGASNLIVNS
NNSSLVDEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR

CSPI04G19260 (gene) of Cucumber (PI 183967) v1 genome