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CSPI04G19570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed DNA polymerase
Genome locationChr4:17348098..17350954
RNA-Seq ExpressionCSPI04G19570
SyntenyCSPI04G19570
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A
IPR002421 - 5'-3' exonuclease
IPR020046 - 5'-3' exonuclease, alpha-helical arch, N-terminal
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144345.1 uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus]2.5e-55100Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIASRGIE
Subjt:  SLRLLRIASRGIE

XP_008449676.1 PREDICTED: DNA polymerase I [Cucumis melo]2.0e-5294.69Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        G+ YGHTYISSNENF+SKGSTFRHTIYPAYKSNRAP PDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIASRGIE
Subjt:  SLRLLRIASRGIE

XP_031739929.1 uncharacterized protein LOC101222649 isoform X3 [Cucumis sativus]2.5e-55100Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIASRGIE
Subjt:  SLRLLRIASRGIE

XP_038899891.1 DNA polymerase I isoform X1 [Benincasa hispida]6.3e-5192.92Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHPYGHT ISSNENFM+KGSTFRHT YPAYKSNR PTPDT+VQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG E
Subjt:  SLRLLRIASRGIE

XP_038899894.1 DNA polymerase I, thermostable isoform X3 [Benincasa hispida]6.3e-5192.92Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHPYGHT ISSNENFM+KGSTFRHT YPAYKSNR PTPDT+VQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG E
Subjt:  SLRLLRIASRGIE

TrEMBL top hitse value%identityAlignment
A0A1S3BMJ7 DNA-directed DNA polymerase9.4e-5394.69Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        G+ YGHTYISSNENF+SKGSTFRHTIYPAYKSNRAP PDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIASRGIE
Subjt:  SLRLLRIASRGIE

A0A6J1D5H5 DNA-directed DNA polymerase2.6e-5091.15Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHP GHT ISSNENFM+KGSTFRH IYPAYKSNR PTPDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG E
Subjt:  SLRLLRIASRGIE

A0A6J1D5H7 DNA-directed DNA polymerase2.6e-5091.15Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHP GHT ISSNENFM+KGSTFRH IYPAYKSNR PTPDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG E
Subjt:  SLRLLRIASRGIE

A0A6J1D6K2 DNA-directed DNA polymerase2.6e-5091.15Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHP GHT ISSNENFM+KGSTFRH IYPAYKSNR PTPDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG E
Subjt:  SLRLLRIASRGIE

A0A6J1D847 uncharacterized protein LOC111017796 isoform X25.7e-5090.27Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        GHP GHT ISSNENFM+KGSTFRH IYPAYKSNR PTPDT+VQGLQYLKASIKSMS+KVIEVPGVEADDVIGTLALRSVA GCKVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLRIA RG +
Subjt:  SLRLLRIASRGIE

SwissProt top hitse value%identityAlignment
O52225 DNA polymerase I, thermostable5.8e-1542.86Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLL
        F +K  +FRH  Y AYK+ RAPTP+   + L  +K  +  + +  +E PG EADDV+GTLA ++   G +VR+++ D+DFFQ+LS  + +L
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLL

P00582 DNA polymerase I1.1e-1339.8Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI
        F +KG TFR  ++  YKS+R P PD +   ++ L A +K+M + ++ V GVEADDVIGTLA  +   G  V + + DKD  Q+++P++ L+   +  I
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI

P30313 DNA polymerase I, thermostable2.9e-1441.76Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLL
        F +K  +FRH  Y AYK+ RAPTP+   + L  +K  +  + +  +EVPG EADDV+ TLA R+   G +VR+++ D+D +Q+LS  + +L
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLL

P43741 DNA polymerase I8.3e-1438.78Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI
        F +KG TFR  ++  YKS+R P PD + + +Q L   I+++ I ++ V G+EADDVIGTLAL++ ++G KV + + DKD  Q++  ++ L+   +  +
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI

Q9F173 DNA polymerase I3.7e-1440.82Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI
        F +KG TFR  ++  YKS+R P PD +   ++ L A +K+M + ++ V GVEADDVIGTLA  +  VG  V + + DKD  Q+++P++ L+   +  I
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGI

Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein1.0e-4377.88Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        G PYG T  SS     +KG  FRHT+YPAYKSNR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIGTLA+RS++ G KVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLR+  RG E
Subjt:  SLRLLRIASRGIE

AT3G52050.2 5'-3' exonuclease family protein1.0e-4377.88Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        G PYG T  SS     +KG  FRHT+YPAYKSNR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIGTLA+RS++ G KVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLR+  RG E
Subjt:  SLRLLRIASRGIE

AT3G52050.3 5'-3' exonuclease family protein1.0e-4377.88Show/hide
Query:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP
        G PYG T  SS     +KG  FRHT+YPAYKSNR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIGTLA+RS++ G KVRVVSPDKDFFQILSP
Subjt:  GHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSP

Query:  SLRLLRIASRGIE
        SLRLLR+  RG E
Subjt:  SLRLLRIASRGIE

AT3G52050.4 5'-3' exonuclease family protein2.2e-4183.51Show/hide
Query:  SKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGIE
        +KG  FRHT+YPAYKSNR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIGTLA+RS++ G KVRVVSPDKDFFQILSPSLRLLR+  RG E
Subjt:  SKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGIE

AT3G52050.5 5'-3' exonuclease family protein8.2e-4181.82Show/hide
Query:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGIE
        F   G  FRHT+YPAYKSNR PTPDT+VQGLQYLKASIK+MSIKVIEVPGVEADDVIGTLA+RS++ G KVRVVSPDKDFFQILSPSLRLLR+  RG E
Subjt:  FMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDFFQILSPSLRLLRIASRGIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTTTCTTGGGATCTAGTTTCATTTCCCTTCCCAATTGTCATGGGACACCCATATGGTCATACTTATATTTCATCCAATGAAAATTTCATGTCAAAAGGATCCAC
TTTTCGTCATACAATTTACCCTGCATACAAGAGTAACAGGGCACCCACACCTGATACCGTAGTCCAGGGGCTCCAGTACTTGAAGGCATCCATAAAGTCCATGTCCATAA
AGGTCATTGAGGTACCTGGAGTGGAAGCCGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCGGTTGGGTGTAAGGTTCGTGTTGTCTCTCCTGACAAAGACTTC
TTCCAGATTCTATCTCCTTCATTACGTCTTTTACGGATAGCTTCACGTGGAATTGAGTACGAACATATGAATTACTTTCTTATTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTTTCTTGGGATCTAGTTTCATTTCCCTTCCCAATTGTCATGGGACACCCATATGGTCATACTTATATTTCATCCAATGAAAATTTCATGTCAAAAGGATCCAC
TTTTCGTCATACAATTTACCCTGCATACAAGAGTAACAGGGCACCCACACCTGATACCGTAGTCCAGGGGCTCCAGTACTTGAAGGCATCCATAAAGTCCATGTCCATAA
AGGTCATTGAGGTACCTGGAGTGGAAGCCGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTGCGGTTGGGTGTAAGGTTCGTGTTGTCTCTCCTGACAAAGACTTC
TTCCAGATTCTATCTCCTTCATTACGTCTTTTACGGATAGCTTCACGTGGAATTGAGTACGAACATATGAATTACTTTCTTATTCATTAA
Protein sequenceShow/hide protein sequence
MRVSWDLVSFPFPIVMGHPYGHTYISSNENFMSKGSTFRHTIYPAYKSNRAPTPDTVVQGLQYLKASIKSMSIKVIEVPGVEADDVIGTLALRSVAVGCKVRVVSPDKDF
FQILSPSLRLLRIASRGIEYEHMNYFLIH