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CSPI04G19580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed DNA polymerase
Genome locationChr4:17374270..17377273
RNA-Seq ExpressionCSPI04G19580
SyntenyCSPI04G19580
Gene Ontology termsGO:0006261 - DNA-dependent DNA replication (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR002298 - DNA polymerase A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144345.1 uncharacterized protein LOC101222649 isoform X1 [Cucumis sativus]7.4e-9498.87Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRL+KRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFP PFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

XP_008449676.1 PREDICTED: DNA polymerase I [Cucumis melo]7.0e-8492.66Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRLMKRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        TR Q MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

XP_011653865.1 uncharacterized protein LOC101222649 isoform X2 [Cucumis sativus]7.4e-9498.87Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRL+KRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFP PFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

XP_031739929.1 uncharacterized protein LOC101222649 isoform X3 [Cucumis sativus]7.4e-9498.87Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRL+KRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFP PFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

XP_038899892.1 DNA polymerase I isoform X2 [Benincasa hispida]1.1e-6879.76Show/hide
Query:  VLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQF
        VLMA HHLHTATASASHICRNFLGFIFTSKFP+PFRFS+SSS +       HS PSFS+LLSPKGYCSSSGSI++ANT+D+  T+HGSSAS+R Q M+QF
Subjt:  VLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQF

Query:  QDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        QDSLS+ LT+KE+TGI+NP+DARVMLIDGTS+I+RAYYKLLAKLHHG+LSHADGNGDWVLTIFTALSL
Subjt:  QDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

TrEMBL top hitse value%identityAlignment
A0A0A0KYZ2 Apocytochr_F_N domain-containing protein7.5e-9296.07Show/hide
Query:  GQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRC
        G RL+KRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFP PFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRC
Subjt:  GQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRC

Query:  QPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLPGSL
        QPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL  ++
Subjt:  QPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLPGSL

A0A1S3BMJ7 DNA-directed DNA polymerase3.4e-8492.66Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRLMKRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        TR Q MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

A0A5A7V6D7 DNA polymerase I5.8e-6890.26Show/hide
Query:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS
        MRIGQRLMKRLG SPS LMASHHLHTATASASHICRNFLGF+FTSKFP PFRFSTSSSRIHSFPS SLLLSPKGYCSSSGSINS+N +DT+ TYHGSSAS
Subjt:  MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSAS

Query:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLH
        TR Q MVQFQDSLSN LTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLL  LH
Subjt:  TRCQPMVQFQDSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLH

A0A6J1F3S3 DNA-directed DNA polymerase1.3e-5973.49Show/hide
Query:  MASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQD
        MA HHLHTATASASHICRNFLG+IFTSKF  P RFS+SSS +       H FPSFS+LL PKGYCSSS S+N+A  +D+  TYHGS AS+  Q M+Q QD
Subjt:  MASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQD

Query:  SLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        SLSN  T KE+T ID P+DARVMLIDGTSII+RAY+KLLAKLHHGHLSHADGNGDWVLTIFTA+SL
Subjt:  SLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

A0A6J1HVF9 DNA-directed DNA polymerase9.0e-6174.7Show/hide
Query:  MASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQD
        MA HHLHTATASASHICRNFLG+IFTSKF  P RFS+SSS +       H FPSFS+LLSPKGYCSSS S+N+A  +D+  TYHGS AS+  Q M+Q QD
Subjt:  MASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRI-------HSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQD

Query:  SLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL
        SLSN  T KE+T ID+P+DARVMLIDGTSII+RAY+KLLAKLHHGHLSHADGNGDWVLTIFTALSL
Subjt:  SLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52050.1 5'-3' exonuclease family protein4.2e-1848.74Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL
        S  S SL  S K YCSS      +N   +  T    S     Q       S+  P  FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL
Subjt:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL

Query:  SHADGNGDWVLTIFTALSL
        +HADGN DWVLTIF++LSL
Subjt:  SHADGNGDWVLTIFTALSL

AT3G52050.2 5'-3' exonuclease family protein4.2e-1848.74Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL
        S  S SL  S K YCSS      +N   +  T    S     Q       S+  P  FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL
Subjt:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL

Query:  SHADGNGDWVLTIFTALSL
        +HADGN DWVLTIF++LSL
Subjt:  SHADGNGDWVLTIFTALSL

AT3G52050.3 5'-3' exonuclease family protein4.2e-1848.74Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL
        S  S SL  S K YCSS      +N   +  T    S     Q       S+  P  FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL
Subjt:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL

Query:  SHADGNGDWVLTIFTALSL
        +HADGN DWVLTIF++LSL
Subjt:  SHADGNGDWVLTIFTALSL

AT3G52050.4 5'-3' exonuclease family protein4.2e-1848.74Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL
        S  S SL  S K YCSS      +N   +  T    S     Q       S+  P  FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL
Subjt:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL

Query:  SHADGNGDWVLTIFTALSL
        +HADGN DWVLTIF++LSL
Subjt:  SHADGNGDWVLTIFTALSL

AT3G52050.5 5'-3' exonuclease family protein4.2e-1848.74Show/hide
Query:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL
        S  S SL  S K YCSS      +N   +  T    S     Q       S+  P  FK +  + + A   + RVMLIDGTSII+RAYYKLLA+L+HGHL
Subjt:  SFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQDSLSNPLTFKEDTGIDNPA---DARVMLIDGTSIIFRAYYKLLAKLHHGHL

Query:  SHADGNGDWVLTIFTALSL
        +HADGN DWVLTIF++LSL
Subjt:  SHADGNGDWVLTIFTALSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAATTGGGCAGCGGTTGATGAAACGCTTGGGCTGTTCTCCCTCAGTTCTCATGGCCTCCCACCATCTTCACACTGCTACTGCTAGTGCTTCGCATATTTGCAGAAA
TTTTTTGGGATTCATTTTCACCTCCAAATTTCCCGATCCTTTTCGCTTCTCTACTTCTTCTTCGAGGATTCATTCTTTTCCTTCGTTCTCCCTTCTGCTATCCCCAAAGG
GTTACTGCAGTTCATCCGGAAGTATAAATTCTGCCAATACCATGGATACGGTTCCAACTTATCATGGTAGTTCTGCATCTACTAGATGCCAGCCAATGGTGCAATTCCAA
GATTCATTATCGAACCCGCTTACGTTCAAAGAAGATACTGGAATTGATAATCCTGCAGATGCTAGAGTCATGCTCATTGATGGCACATCAATCATTTTTAGAGCATACTA
CAAGCTTTTGGCAAAGCTTCATCATGGACATTTATCACATGCGGATGGAAATGGAGATTGGGTGCTAACAATATTTACTGCTTTGTCACTTCCGGGTTCTTTAGCAGACC
CTTTCAATAAGTCTCAAAGCACAACATGGAGGTTATCAGTTGCAAAATCGATCAGTCACACTACTGCATTTGGAAAGAGGAAAATTGCAAACTCCGGTGGACAGTCATTT
CAGGAAATTCGGGGACATTGA
mRNA sequenceShow/hide mRNA sequence
AGACAACAAAGGTACATGCGAATTGGGCAGCGGTTGATGAAACGCTTGGGCTGTTCTCCCTCAGTTCTCATGGCCTCCCACCATCTTCACACTGCTACTGCTAGTGCTTC
GCATATTTGCAGAAATTTTTTGGGATTCATTTTCACCTCCAAATTTCCCGATCCTTTTCGCTTCTCTACTTCTTCTTCGAGGATTCATTCTTTTCCTTCGTTCTCCCTTC
TGCTATCCCCAAAGGGTTACTGCAGTTCATCCGGAAGTATAAATTCTGCCAATACCATGGATACGGTTCCAACTTATCATGGTAGTTCTGCATCTACTAGATGCCAGCCA
ATGGTGCAATTCCAAGATTCATTATCGAACCCGCTTACGTTCAAAGAAGATACTGGAATTGATAATCCTGCAGATGCTAGAGTCATGCTCATTGATGGCACATCAATCAT
TTTTAGAGCATACTACAAGCTTTTGGCAAAGCTTCATCATGGACATTTATCACATGCGGATGGAAATGGAGATTGGGTGCTAACAATATTTACTGCTTTGTCACTTCCGG
GTTCTTTAGCAGACCCTTTCAATAAGTCTCAAAGCACAACATGGAGGTTATCAGTTGCAAAATCGATCAGTCACACTACTGCATTTGGAAAGAGGAAAATTGCAAACTCC
GGTGGACAGTCATTTCAGGAAATTCGGGGACATTGA
Protein sequenceShow/hide protein sequence
MRIGQRLMKRLGCSPSVLMASHHLHTATASASHICRNFLGFIFTSKFPDPFRFSTSSSRIHSFPSFSLLLSPKGYCSSSGSINSANTMDTVPTYHGSSASTRCQPMVQFQ
DSLSNPLTFKEDTGIDNPADARVMLIDGTSIIFRAYYKLLAKLHHGHLSHADGNGDWVLTIFTALSLPGSLADPFNKSQSTTWRLSVAKSISHTTAFGKRKIANSGGQSF
QEIRGH