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CSPI04G19590 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19590
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosome biogenesis protein
Genome locationChr4:17382979..17388385
RNA-Seq ExpressionCSPI04G19590
SyntenyCSPI04G19590
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]1.3e-7396.84Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]9.0e-7095.42Show/hide
Query:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]2.9e-76100Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_038883686.1 putative ribosome biogenesis protein slx9-like isoform X1 [Benincasa hispida]1.0e-6589.24Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+I+KKK++RRRKRDLKAFDLS LSEFLPGL A KQKPSAAE KLNCKSRLKF+LKERKQM 
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRA++LHLEGTQPIEEPKKKK NKNGSKKRKEKKS ASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]6.9e-7093.67Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+ITKKK+HRRRKRDLKAFDLSTLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRA+QLHLEGTQPIEEP KKK NKNGSKKRKEKKSKAS +PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein1.4e-76100Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like4.3e-7095.42Show/hide
Query:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
        ++SDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH
Subjt:  SRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNH

Query:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        PVFQADPLRAVQLHLEGTQPIEEPKKKK+NKNGSKKRKEKKSKA A+PSSMEM
Subjt:  PVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like6.5e-7496.84Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKPVSRSDVKSKAERKFEKKVQFYERVGE+I TLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHPVFQADPLRAVQLHLEGTQP EEPKKKKMNKNGSKKRKEKK KASA+PSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A6J1E5M8 putative ribosome biogenesis protein slx9-like3.1e-6082.28Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHP FQADPL A+ LHL+ TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
A0A6J1JDX4 putative ribosome biogenesis protein slx9-like4.1e-6082.28Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITKKK  RRRKRDLKAFDL+ LSEFLPGL+  KQK S  ELK+NCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMG

Query:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
        TVLNHP FQADPL A+ LHLE TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  TVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein7.1e-3351.63Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
          VL+HP FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
AT2G01640.2 unknown protein7.1e-3351.63Show/hide
Query:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM
        MGKP   S+V +K+++KFEKK+QFY +V +T+T+L+ QK I KKK  R R++ LKA+DL+ LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEA-TKQKPSAAELKLNCKSRLKFILKERKQM

Query:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA
          VL+HP FQADP+ ++  HL   Q P+EE  KKK N NGSKKR +KK K  +
Subjt:  GTVLNHPVFQADPLRAVQLHLEGTQ-PIEEPKKKKMNKNGSKKRKEKKSKASA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACCTTGAATGC
TCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGCGACAAAAC
AAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGTTTCAGGCA
GACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAGAAGAAGTC
AAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
GAAGCTTTACCAATTTGTTCGTAATTTTCGATTTCACGCTTAAGAGTTTTAATTTCACGCCGCCTCAATCATCTCTCTAACTCACCTTCTCGTTTCGGGCTCTCATCTCA
CGCCGTCGCCGGCGTTCAATCTCTCTCCTTCTCAGTCTTCGGTCGTCTCTCCTTCTCAGAAGTCTCTCAATCTCCCATCTTTCAATCTCCGATCGTCGCTCGCGCTCGGC
TCTCTCTCACCATGGCGTTGCAGGACTAACCAATCGGATTATTTTTCTCAAGAAGTTTTTGATTTGAGGAAATTCCATCTTTTGATTCAAGTAATCAGAAAACTCACAAG
TTGTTATTATGGGCAAACCAGTCTCCCGGTCGGATGTGAAATCTAAAGCTGAACGCAAATTTGAGAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTACTACC
TTGAATGCTCAAAAGAGTATTACTAAGAAGAAAAACCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACACTTTCAGAGTTTCTTCCTGGATTGGAGGC
GACAAAACAAAAACCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAATTCATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTGT
TTCAGGCAGACCCATTGAGAGCTGTTCAGCTACATTTAGAGGGCACACAACCAATTGAGGAACCGAAGAAAAAGAAAATGAATAAAAATGGGAGCAAAAAAAGGAAAGAG
AAGAAGTCAAAAGCCTCGGCAAAACCTTCATCTATGGAGATGTGACTAATCTTCTTTTGCCATGTAAGCCTCTTTGGTAAATACTTACATGCTCATTTTGATCCGTGAAA
TTAACTTGTTTGTTATCATTAACAAGTTGATCTCGCTTGAGCTTTGAATTTTCTCCTGGAATCAGATTCCGGTAGGCAATTCTTGTTTTTGAATGCATAGGCAACCCACC
TTGATTTTGTTTGTTTATAGATAGGAGCAGCTCCTCTGCAAACATTGTCATGATATTTTAAATATTATCTTTGACTGAAATAATGGTCTATTTCTTCTTCTATAAAAGTA
Protein sequenceShow/hide protein sequence
MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLSTLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQA
DPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM