; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G19830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:17654720..17655679
RNA-Seq ExpressionCSPI04G19830
SyntenyCSPI04G19830
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-9461.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-9461.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

KAA0063300.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-9461.49Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q  RP+ YFS  L+M DRA+PVYEREL+ VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EII+ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYC+EC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-9461.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-9461.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

TrEMBL top hitse value%identityAlignment
A0A5A7SIV7 Ty3/gypsy retrotransposon protein7.0e-9561.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

A0A5A7U6J3 Ty3/gypsy retrotransposon protein9.2e-9561.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

A0A5A7V7S9 Ty3/gypsy retrotransposon protein1.6e-9461.49Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q  RP+ YFS  L+M DRA+PVYEREL+ VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EII+ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYC+EC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

A0A5D3CXB1 Ty3/gypsy retrotransposon protein7.0e-9561.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

A0A5D3DI73 Ty3/gypsy retrotransposon protein7.0e-9561.15Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ
        AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYERELM VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQ

Query:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI
        +Q+W+AKLLGY+F+V+YKPGLENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E                         K+  +
Subjt:  HQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE-------------------------KSEAI

Query:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV
                  SVFGGH G L  YKR+ GELY +GMK DVQKYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Subjt:  ----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.9e-1937.8Show/hide
Query:  PNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWM
        P L +P+FT  F + TD S   +G VL+Q+  P+ Y S TL   +      E+EL+ +V+A + ++ YLLGR F + +D + L +L   +    +  RW 
Subjt:  PNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWM

Query:  AKLLGYNFDVVYKPGLENKAADALSRV
         KL  ++FD+ Y  G EN  ADALSR+
Subjt:  AKLLGYNFDVVYKPGLENKAADALSRV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-1926.51Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQ
        A+  SP L   N    +++ TD S  GIG VL + +        + YFS +L    +  P  E EL+ ++ A   ++  L G+ F ++TD  SL  L  +
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQ

Query:  RVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII----------------AKLEK
             + QRW+  L  Y+F + Y  G +N  ADA+SR   T+          +DT   K+  + D       + +KE+                  KLE 
Subjt:  RVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII----------------AKLEK

Query:  SEAI----------------------------------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV
        SE                                    ++FGGH G      +++   Y   ++  + +Y   C+ CQ  K+      GLL  L IA+  
Subjt:  SEAI----------------------------------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV

Query:  WSEISMDFIDGLPKSKG--HEVILVVDIFLKR
        W +ISMDF+ GLP +    + +++VVD F KR
Subjt:  WSEISMDFIDGLPKSKG--HEVILVVDIFLKR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.6e-1936.88Show/hide
Query:  MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQN----NRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFV-VKTDQRSLKFLLEQRV
        + +S  LA P FT PF + TD S + IG VL+Q+    +RPI Y S +L   +      E+E++ ++++    + YL G   + V TD + L F L  R 
Subjt:  MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQN----NRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFV-VKTDQRSLKFLLEQRV

Query:  IQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVH
           + +RW A++  YN +++YKPG  N  ADALSR+PP ++
Subjt:  IQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVH

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.2e-1926.51Show/hide
Query:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQ
        A+  SP L   N    +++ TD S  GIG VL + +        + YFS +L    +  P  E EL+ ++ A   ++  L G+ F ++TD  SL  L  +
Subjt:  AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQ

Query:  RVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII----------------AKLEK
             + QRW+  L  Y+F + Y  G +N  ADA+SR   T+          +DT   K+  + D       + +KE+                  KLE 
Subjt:  RVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII----------------AKLEK

Query:  SEAI----------------------------------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV
        SE                                    ++FGGH G      +++   Y   ++  + +Y   C+ CQ  K+      GLL  L IA+  
Subjt:  SEAI----------------------------------SVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV

Query:  WSEISMDFIDGLPKSKG--HEVILVVDIFLKR
        W +ISMDF+ GLP +    + +++VVD F KR
Subjt:  WSEISMDFIDGLPKSKG--HEVILVVDIFLKR

Q9UR07 Transposon Tf2-11 polyprotein1.0e-1825.23Show/hide
Query:  MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNN-----RPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLG--RRFVVKTDQRSL--KFLL
        +++ P L   +F+    +ETD S   +G VL+Q +      P+ Y+S  ++       V ++E++ ++ + + W+ YL      F + TD R+L  +   
Subjt:  MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNN-----RPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLG--RRFVVKTDQRSL--KFLL

Query:  EQRVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVH-----------------------LNHLIAPALLDTSVLK------TEVEEDVKLK
        E      +  RW   L  +NF++ Y+PG  N  ADALSR+                             N ++     DT +L         VEE+++LK
Subjt:  EQRVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVH-----------------------LNHLIAPALLDTSVLK------TEVEEDVKLK

Query:  E---------------------IIAKLEKSEAISVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEIS
        +                     II K  +   +   G  L      +R T     +G++  +Q+Y + C  CQ NK+    P G L  +  ++  W  +S
Subjt:  E---------------------IIAKLEKSEAISVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEIS

Query:  MDFIDGLPKSKGHEVI-LVVDIFLK
        MDFI  LP+S G+  + +VVD F K
Subjt:  MDFIDGLPKSKGHEVI-LVVDIFLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGATGACTTCACCAAATTTAGCACTGCCAAATTTTACATTGCCGTTTAAAATAGAGACTGACACATCAGGTTATGGAATAGGTGATGTACTTACTCAGAATAA
TCGACCAATACCCTATTTCAGTCACACTTTGGCCATGGGAGATAGAGCCAAGCCAGTCTATGAACGAGAATTAATGGTTGTAGTATACGCAAACCAACGATGGAAACCAT
ATCTTTTGGGAAGGAGATTTGTAGTTAAAACGGATCAGCGCTCATTGAAGTTTTTATTAGAGCAGAGGGTTATTCAACCTCAACATCAAAGGTGGATGGCTAAATTGCTG
GGGTACAATTTTGATGTAGTGTACAAACCTGGCCTTGAAAACAAAGCAGCAGACGCACTATCGAGGGTCCCTCCAACGGTACATCTAAATCATCTCATTGCTCCAGCCTT
GCTGGACACATCAGTCCTTAAAACAGAAGTGGAAGAGGATGTCAAGTTGAAGGAAATCATCGCAAAGTTAGAAAAGAGTGAAGCAATTTCTGTCTTTGGAGGCCATTTGG
GATGCTTGACGGCTTATAAAAGATTAACAGGTGAGCTATATCGGGAAGGGATGAAAGTTGATGTGCAAAAATACTGTGAGGAATGTTTGGCCTGTCAACGTAACAAAACA
ATGGCTTTATCACCTGCCGGATTACTCATGTCCCTAGAAATAGCAGATGCGGTTTGGAGCGAGATATCTATGGACTTCATTGATGGCCTACCTAAATCCAAAGGACATGA
GGTAATACTTGTTGTAGATATATTTTTGAAACGGAGACAAACCTCTTTATTAAATGAGACTAATGCTCAAAGTATAAGAGAATTATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGATGACTTCACCAAATTTAGCACTGCCAAATTTTACATTGCCGTTTAAAATAGAGACTGACACATCAGGTTATGGAATAGGTGATGTACTTACTCAGAATAA
TCGACCAATACCCTATTTCAGTCACACTTTGGCCATGGGAGATAGAGCCAAGCCAGTCTATGAACGAGAATTAATGGTTGTAGTATACGCAAACCAACGATGGAAACCAT
ATCTTTTGGGAAGGAGATTTGTAGTTAAAACGGATCAGCGCTCATTGAAGTTTTTATTAGAGCAGAGGGTTATTCAACCTCAACATCAAAGGTGGATGGCTAAATTGCTG
GGGTACAATTTTGATGTAGTGTACAAACCTGGCCTTGAAAACAAAGCAGCAGACGCACTATCGAGGGTCCCTCCAACGGTACATCTAAATCATCTCATTGCTCCAGCCTT
GCTGGACACATCAGTCCTTAAAACAGAAGTGGAAGAGGATGTCAAGTTGAAGGAAATCATCGCAAAGTTAGAAAAGAGTGAAGCAATTTCTGTCTTTGGAGGCCATTTGG
GATGCTTGACGGCTTATAAAAGATTAACAGGTGAGCTATATCGGGAAGGGATGAAAGTTGATGTGCAAAAATACTGTGAGGAATGTTTGGCCTGTCAACGTAACAAAACA
ATGGCTTTATCACCTGCCGGATTACTCATGTCCCTAGAAATAGCAGATGCGGTTTGGAGCGAGATATCTATGGACTTCATTGATGGCCTACCTAAATCCAAAGGACATGA
GGTAATACTTGTTGTAGATATATTTTTGAAACGGAGACAAACCTCTTTATTAAATGAGACTAATGCTCAAAGTATAAGAGAATTATACTAA
Protein sequenceShow/hide protein sequence
MAMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLL
GYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLEKSEAISVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKT
MALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVVDIFLKRRQTSLLNETNAQSIRELY