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CSPI04G19840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSpermidine synthase
Genome locationChr4:17666415..17666869
RNA-Seq ExpressionCSPI04G19840
SyntenyCSPI04G19840
Gene Ontology termsGO:0006596 - polyamine biosynthetic process (biological process)
GO:0004766 - spermidine synthase activity (molecular function)
InterPro domainsIPR001045 - Spermidine/spermine synthases
IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase
IPR030374 - Polyamine biosynthesis domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013301.1 Spermine synthase [Cucurbita argyrosperma subsp. argyrosperma]3.8e-4288.89Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGP VDFRNPVNPIE LGH KSKRELKFYNSEMH AAFALPSFLK EV+AL+DA AS K G ISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

XP_004150312.1 spermine synthase [Cucumis sativus]5.0e-5097.98Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDF NPVNPIEN+GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

XP_008441613.1 PREDICTED: spermine synthase-like [Cucumis melo]3.0e-4794.95Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISIC QTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE LGH KSKRELKFYNSEMHSAAFALPSFLKREV+AL+DAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

XP_022141267.1 spermine synthase-like [Momordica charantia]1.2e-4390.1Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL--GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCIS
        MISICR+TFKDVHYAWTSVPTYPSGVIGFLLCSTEGP VDFRNPVNPIENL   H KSKRELKFYNSEMHSAAFALPSFLKREV+AL+DAP SGKNG IS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL--GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCIS

Query:  S
        S
Subjt:  S

XP_038878719.1 spermine synthase-like [Benincasa hispida]2.3e-4795.96Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISICRQTFKDV YAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE LGH KSKRELKFYNSEMHSAAFALPSFLKREVQAL+DAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

TrEMBL top hitse value%identityAlignment
A0A0A0LC47 PABS domain-containing protein2.4e-5097.98Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDF NPVNPIEN+GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

A0A1S3B3T6 spermine synthase-like1.5e-4794.95Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISIC QTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE LGH KSKRELKFYNSEMHSAAFALPSFLKREV+AL+DAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

A0A5D3BTV3 Spermine synthase-like1.5e-4794.95Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISIC QTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE LGH KSKRELKFYNSEMHSAAFALPSFLKREV+AL+DAPASGKNGCISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

A0A6J1CJE6 spermine synthase-like5.7e-4490.1Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL--GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCIS
        MISICR+TFKDVHYAWTSVPTYPSGVIGFLLCSTEGP VDFRNPVNPIENL   H KSKRELKFYNSEMHSAAFALPSFLKREV+AL+DAP SGKNG IS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL--GHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCIS

Query:  S
        S
Subjt:  S

A0A6J1HVE7 spermine synthase-like1.8e-4288.89Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS
        MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGP VDFRNPVNPIE LGH KSKRELKFYNSEMH AAFALPSFLK EV+AL+DA AS K G ISS
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS

SwissProt top hitse value%identityAlignment
O48658 Spermidine synthase 13.6e-2762.35Show/hide
Query:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA
        +++ CRQ FK  V+YAWT+VPTYPSG+IGF+LCSTEGP VDF+NP+NPI++   PK+   LKFYNSE+H A+F LPSF KR +++
Subjt:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA

O48659 Spermidine synthase 21.6e-2765.12Show/hide
Query:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA
        ++S CRQ FK  V+YAWT+VPTYPSGVIGF+LCSTEGP VDF+NP+NPI+ +  H K++  LKFYNSE+HSA+F LPSF KR +++
Subjt:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA

O82147 Spermidine synthase8.0e-2763.95Show/hide
Query:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA
        +++ CRQ FK  V+YAWT+VPTYPSGVIGF+LCSTEGP VDF++P+NPI+ N G  K+ + LKFYNSE+HSAAF LPSF K+ + +
Subjt:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA

Q94BN2 Spermine synthase2.3e-3479.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL

Q96556 Spermidine synthase 14.7e-2762.79Show/hide
Query:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA
        +++ CRQ FK  V+YAWT+VPTYPSGVIGF+LCSTEGP VDF+NP+NP++ +  H K++  LKFYNSE+HSA+F LPSF KR +++
Subjt:  MISICRQTFK-DVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIE-NLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQA

Arabidopsis top hitse value%identityAlignment
AT5G53120.1 spermidine synthase 31.7e-3579.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL

AT5G53120.2 spermidine synthase 31.7e-3579.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL

AT5G53120.3 spermidine synthase 31.7e-3579.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL

AT5G53120.4 spermidine synthase 31.7e-3579.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL

AT5G53120.5 spermidine synthase 31.7e-3579.07Show/hide
Query:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL
        MISICRQTFK VHYAW+SVPTYPSGVIGF+LCSTEGP VDF+NP+NPIE L G    KRELKFYNS+MH AAFALP+FL+REV +L
Subjt:  MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENL-GHPKSKRELKFYNSEMHSAAFALPSFLKREVQAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCGATTTGTCGCCAAACATTCAAGGATGTTCACTATGCATGGACCAGTGTTCCAACATATCCAAGTGGTGTCATTGGGTTTCTGCTCTGTTCAACTGAAGGGCC
AAAAGTTGATTTCAGGAATCCTGTGAATCCTATCGAGAATTTAGGACATCCCAAGTCCAAAAGAGAACTCAAGTTCTACAATTCTGAGATGCACTCGGCTGCTTTTGCGC
TGCCATCGTTTCTGAAAAGGGAGGTGCAGGCACTTAACGATGCTCCAGCTTCGGGTAAAAATGGATGCATTTCATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATCGATTTGTCGCCAAACATTCAAGGATGTTCACTATGCATGGACCAGTGTTCCAACATATCCAAGTGGTGTCATTGGGTTTCTGCTCTGTTCAACTGAAGGGCC
AAAAGTTGATTTCAGGAATCCTGTGAATCCTATCGAGAATTTAGGACATCCCAAGTCCAAAAGAGAACTCAAGTTCTACAATTCTGAGATGCACTCGGCTGCTTTTGCGC
TGCCATCGTTTCTGAAAAGGGAGGTGCAGGCACTTAACGATGCTCCAGCTTCGGGTAAAAATGGATGCATTTCATCGTAA
Protein sequenceShow/hide protein sequence
MISICRQTFKDVHYAWTSVPTYPSGVIGFLLCSTEGPKVDFRNPVNPIENLGHPKSKRELKFYNSEMHSAAFALPSFLKREVQALNDAPASGKNGCISS