; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G19900 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19900
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSWIB domain-containing protein
Genome locationChr4:17737909..17742271
RNA-Seq ExpressionCSPI04G19900
SyntenyCSPI04G19900
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603170.1 hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia]2.9e-4390.1Show/hide
Query:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS
        KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN 
Subjt:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS

Query:  K
        K
Subjt:  K
KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]1.1e-9898.35Show/hide
Query:  IDRHATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLA
        +D HATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLA
Subjt:  IDRHATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLA

Query:  NLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        NLIDLVNLPSTLREFVGHSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  NLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]1.8e-4592Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]6.1e-4999Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]3.7e-4695Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein4.5e-9899.44Show/hide
Query:  HATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLI
        HATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLI
Subjt:  HATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLI

Query:  DLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        DLVNLPSTLREFVGHSQ+SRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Subjt:  DLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A1S3BL41 upstream activation factor subunit spp278.9e-4692Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A6J1ELR1 upstream activation factor subunit UAF305.4e-4390Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
A0A6J1HWJ0 protein TRI1 isoform X12.4e-4390.1Show/hide
Query:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS
        KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN 
Subjt:  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNS

Query:  K
        K
Subjt:  K
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X29.2e-4390Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp273.5e-0746.15Show/hide
Query:  VNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI
Q05024 Protein TRI18.6e-0630Show/hide
Query:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ +  +  L+  H
Subjt:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLH
Q08747 Upstream activation factor subunit UAF307.8e-0733.77Show/hide
Query:  VNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        V L  +L   +G  +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H  +  K
Subjt:  VNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.3e-1244.93Show/hide
Query:  LREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
        L  F G  +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  L+  HFPK+
Subjt:  LREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN
AT2G35605.1 SWIB/MDM2 domain superfamily protein4.7e-1535.29Show/hide
Query:  CTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPK
        C  +  K          ++   ++ +V +   L  F+G ++VSR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK
Subjt:  CTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPK

Query:  NS
        ++
Subjt:  NS
AT3G03590.1 SWIB/MDM2 domain superfamily protein1.8e-1133.65Show/hide
Query:  KMATKRMKMAITDNPKK----LANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF
        K   K    A +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  + CDE LK I  GK KV   E+  L+  HF
Subjt:  KMATKRMKMAITDNPKK----LANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHF

Query:  PKNS
         K +
Subjt:  PKNS
AT4G26810.1 SWIB/MDM2 domain superfamily protein7.7e-4281Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +R+K AITDNPKKL NLIDLVNLPSTLR FVG SQ+SRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
AT4G26810.2 SWIB/MDM2 domain superfamily protein7.7e-4281Show/hide
Query:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK
        M  +R+K AITDNPKKL NLIDLVNLPSTLR FVG SQ+SRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Subjt:  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGAATAAGAAAGATTGATCGCCACGCCACTGCTCGTCCCTTTCCGGCGCCGTTTCAAGGGGCTGCAGTCGGTAAGCGTCCTTTTCCCTATTTCTTTATCTCAAT
AAGTTCCGTTCTGTCAGCTCCATCCGGTCGCTGTCGTTTCAAATCAGGTCCGCCGCTGGTGTCTGCGGCGTGCAAATTGTGTTGCCGTCAGAAGCTGCTGCCGGTTGCCG
AAGTTTTGAATTTTGGTGGAGGAACAAACTTGTTGTGCACAAAAATGGCAACAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCAAACTTGATTGAT
CTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACATTCCCAAGTTTCTCGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGA
TCCCACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATACTGCTGGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTCC
CCAAAAATTCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGAATAAGAAAGATTGATCGCCACGCCACTGCTCGTCCCTTTCCGGCGCCGTTTCAAGGGGCTGCAGTCGGTAAGCGTCCTTTTCCCTATTTCTTTATCTCAAT
AAGTTCCGTTCTGTCAGCTCCATCCGGTCGCTGTCGTTTCAAATCAGGTCCGCCGCTGGTGTCTGCGGCGTGCAAATTGTGTTGCCGTCAGAAGCTGCTGCCGGTTGCCG
AAGTTTTGAATTTTGGTGGAGGAACAAACTTGTTGTGCACAAAAATGGCAACAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCAAACTTGATTGAT
CTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACATTCCCAAGTTTCTCGTCTTGGCTGTTTCAAGTGTGTGTGGTCATATATTAAAACCAACAACCTTCAGGA
TCCCACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATACTGCTGGGCAAGCCCAAGGTTGAACTAGCCGAACTTCCTGCACTGATTAAATTACATTTCC
CCAAAAATTCCAAGTGA
Protein sequenceShow/hide protein sequence
MSGIRKIDRHATARPFPAPFQGAAVGKRPFPYFFISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMATKRMKMAITDNPKKLANLID
LVNLPSTLREFVGHSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK