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CSPI04G19910 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G19910
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr4:17745918..17746738
RNA-Seq ExpressionCSPI04G19910
SyntenyCSPI04G19910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048656.1 envelope-like protein [Cucumis melo var. makuwa]1.8e-2747.67Show/hide
Query:  PPVSLRSVPNHLSHNLIFPTVHKVLPPR-----------------QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSN
        P +    VP H   N   P+    +P                   +EFI NLP EF+DP+SS+YQT+HIR  +FV SP VIN FLG       S SS S 
Subjt:  PPVSLRSVPNHLSHNLIFPTVHKVLPPR-----------------QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSN

Query:  EELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLF
        + L SVL  G T + W VNGI A SL IK  ILHKIGIANWFPS  ASSVSAAL   LY+I   + VD+  F
Subjt:  EELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLF

KAE8649731.1 hypothetical protein Csa_012526 [Cucumis sativus]1.7e-10297.96Show/hide
Query:  MPLNHESETAPDAHTFVGHSSLLRASYLSPNHHEIVSPPPVSLRSVPNHLSHNLIFPTVHKVLPPRQEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPY
        MP NHESETAPDAHTFVGHSSLLRASYLSPNHHEIVSPPPVSLRSVPNHLSHNLIFPTVHK+LPPRQEFIANLPSEFDDPNSSDYQTIHIRRSRFV SPY
Subjt:  MPLNHESETAPDAHTFVGHSSLLRASYLSPNHHEIVSPPPVSLRSVPNHLSHNLIFPTVHKVLPPRQEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPY

Query:  VINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLFNHT
        VINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIK EILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLFNHT
Subjt:  VINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLFNHT

TYK18155.1 uncharacterized protein E5676_scaffold411G00870 [Cucumis melo var. makuwa]4.0e-2758.27Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI NLP EF+DP+S +YQT+HIR  +FV SP VIN FLG       S SS S + L SVL+ G T + W VNGI A SL IK  ILHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASSVSAAL   LY+I   + VD+  F
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

TYK29234.1 uncharacterized protein E5676_scaffold1228G00240 [Cucumis melo var. makuwa]2.1e-2859.06Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI  LPSEF+D +S DYQT+HIR S+F  SPYVINSFLG T  +   +S  SN EL  VL+ G T  +W VNGI   SL  K E+LHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASS+SAALA+ LY+I   +S D+ LF
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

XP_016901049.1 PREDICTED: uncharacterized protein LOC103492891 [Cucumis melo]6.8e-2757.48Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI NLP EF+DP+S +YQT+HIR  +FV SP VIN FLG       S SS S + L SVL+ G T + W VNGI A SL IK  ILHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         +SSVSAAL   LY+I   + VD+  F
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

TrEMBL top hitse value%identityAlignment
A0A5A7T1J2 Uncharacterized protein3.3e-2756.69Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI NLP EF+DP+S DYQ++HIR  +FV S  VIN FLG T     S S  + E L +VL+ G  FT W VNGILAA+L +K  ILHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASS+SAAL   LY+I     VD   F
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

A0A5A7U346 Envelope-like protein8.7e-2847.67Show/hide
Query:  PPVSLRSVPNHLSHNLIFPTVHKVLPPR-----------------QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSN
        P +    VP H   N   P+    +P                   +EFI NLP EF+DP+SS+YQT+HIR  +FV SP VIN FLG       S SS S 
Subjt:  PPVSLRSVPNHLSHNLIFPTVHKVLPPR-----------------QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSN

Query:  EELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLF
        + L SVL  G T + W VNGI A SL IK  ILHKIGIANWFPS  ASSVSAAL   LY+I   + VD+  F
Subjt:  EELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLF

A0A5D3D2X7 Uncharacterized protein1.9e-2758.27Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI NLP EF+DP+S +YQT+HIR  +FV SP VIN FLG       S SS S + L SVL+ G T + W VNGI A SL IK  ILHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASSVSAAL   LY+I   + VD+  F
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

A0A5D3DQA5 Uncharacterized protein3.3e-2756.69Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI NLP EF+DP+S DYQ++HIR  +FV S  VIN FLG T     S S  + E L +VL+ G  FT W VNGILAA+L +K  ILHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASS+SAAL   LY+I     VD   F
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

A0A5D3E0B7 Uncharacterized protein1.0e-2859.06Show/hide
Query:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF
        +EFI  LPSEF+D +S DYQT+HIR S+F  SPYVINSFLG T  +   +S  SN EL  VL+ G T  +W VNGI   SL  K E+LHKIGIANWFPS 
Subjt:  QEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTAPASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSF

Query:  DASSVSAALAMLLYRIGTGSSVDSSLF
         ASS+SAALA+ LY+I   +S D+ LF
Subjt:  DASSVSAALAMLLYRIGTGSSVDSSLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTAAATCACGAATCTGAGACTGCTCCTGATGCTCATACATTTGTCGGTCATTCCTCCCTTTTACGAGCATCGTATCTTTCTCCTAATCATCATGAAATTGTTTC
TCCTCCTCCTGTGTCCCTGAGAAGTGTGCCAAACCATCTCAGTCACAACCTAATCTTTCCAACGGTCCACAAGGTGTTACCACCAAGACAGGAGTTTATAGCGAATCTTC
CTTCTGAGTTTGATGATCCTAACAGTTCTGATTACCAGACCATTCACATTCGCAGATCCCGTTTTGTCACTTCTCCATATGTGATAAATTCATTTCTCGGTGTTACTGCT
CCTGCCAGCCCATCCTTGTCATCTCTATCAAATGAAGAATTGGTGTCTGTCTTAACTTGTGGGATGACTTTCACTATTTGGTCCGTTAATGGAATTCTTGCTGCTTCTCT
GAGAATTAAGTGTGAGATTTTGCACAAGATTGGGATTGCAAATTGGTTCCCTTCGTTTGATGCTTCCAGTGTGTCTGCTGCTTTGGCTATGCTTCTTTATCGAATTGGTA
CTGGGTCTTCAGTTGATTCAAGTTTGTTCAATCACACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTAAATCACGAATCTGAGACTGCTCCTGATGCTCATACATTTGTCGGTCATTCCTCCCTTTTACGAGCATCGTATCTTTCTCCTAATCATCATGAAATTGTTTC
TCCTCCTCCTGTGTCCCTGAGAAGTGTGCCAAACCATCTCAGTCACAACCTAATCTTTCCAACGGTCCACAAGGTGTTACCACCAAGACAGGAGTTTATAGCGAATCTTC
CTTCTGAGTTTGATGATCCTAACAGTTCTGATTACCAGACCATTCACATTCGCAGATCCCGTTTTGTCACTTCTCCATATGTGATAAATTCATTTCTCGGTGTTACTGCT
CCTGCCAGCCCATCCTTGTCATCTCTATCAAATGAAGAATTGGTGTCTGTCTTAACTTGTGGGATGACTTTCACTATTTGGTCCGTTAATGGAATTCTTGCTGCTTCTCT
GAGAATTAAGTGTGAGATTTTGCACAAGATTGGGATTGCAAATTGGTTCCCTTCGTTTGATGCTTCCAGTGTGTCTGCTGCTTTGGCTATGCTTCTTTATCGAATTGGTA
CTGGGTCTTCAGTTGATTCAAGTTTGTTCAATCACACATAG
Protein sequenceShow/hide protein sequence
MPLNHESETAPDAHTFVGHSSLLRASYLSPNHHEIVSPPPVSLRSVPNHLSHNLIFPTVHKVLPPRQEFIANLPSEFDDPNSSDYQTIHIRRSRFVTSPYVINSFLGVTA
PASPSLSSLSNEELVSVLTCGMTFTIWSVNGILAASLRIKCEILHKIGIANWFPSFDASSVSAALAMLLYRIGTGSSVDSSLFNHT